Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq108 307 3e-78 >seq108 Length=147947 Score = 307 bits (340), Expect = 3e-78 Identities = 645/947 (68%), Gaps = 18/947 (2%) Strand=Plus/Plus Query 363358 ATCAATTATGAGAAGGATCTCGAGTATGATATTTTCGGATATAAGACGATGGAGAAATCC 363417 ||||| | || || ||| ||||||| ||| || || | ||| || | ||||| ||| Sbjct 12344 ATCAACCACGACAACGATTTCGAGTACGATTACTTTGGTTTTAAAACCCTCGAGAAGTCC 12403 Query 363418 TACCTATCTCGTATCAATGGTGATATTGTTGAACGCCCGCAGCATATGTTAATGCGTGTT 363477 ||| | ||||||| | || | ||||| || ||| ||||| ||||| || Sbjct 12404 TACTTGCTYAAGCTCAATGGCAAGATCGCAGAACGACCACAGTGCATGTTGATGCGCGTC 12463 Query 363478 GCTATTGGTATCCATTGCCCGGATGTTGATGCCGCGATTGAA-ACATATAA--GCTTCTA 363534 || |||| || || | ||| | || || | ||| | || ||||| || ||| Sbjct 12464 GCCGTTGGAATTCACGGAGATGATATCGA-GCGGGTCTTGGAGACCTATAAAGGCCTCTC 12522 Query 363535 AGTGCTCGTGTATTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCA 363594 | | | ||||| || ||||| || || | | ||| || ||||| || || Sbjct 12523 GGAAC--GATACTTCACCCATGCCACACCGACCCTCTTCAACGCCGGAACCAACAACCCT 12580 Query 363595 CAGATGTCTTCTTGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGAC 363654 |||||||| ||||| ||||| | | ||||||||| || |||||||| || |||| ||| Sbjct 12581 CAGATGTCCTCTTGTTTTCTGTTGACAATGAAGGAAGACTCCATCGATGGCATCTACGAC 12640 Query 363655 ACACTTAAGAATTGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCAC 363714 ||||| |||| || || | ||||| ||| | ||||| ||||||||| | | | |||| Sbjct 12641 ACACTCAAGAGCTGCGCCGTGATTTCGAAGTACGCAGGTGGAATTGGTCTGGCAACCCAC 12700 Query 363715 AATGTTCGTGCACAGAACAGT-TACATTCGCGGCACAGGGGGATAC-TCGAATGGGCTGG 363772 || ||||||| ||| | | |||||||| || || || ||| || ||||| | | Sbjct 12701 AACATTCGTGC-CAGTAAATCCTACATTCGTGGAACCAACGG-TACATCCAATGGCATCG 12758 Query 363773 TTCCCATGCTTCGTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGC 363832 | |||||| | ||||| || |||| || || | |||||||| ||||||||||| |||| Sbjct 12759 TCCCCATGTTGCGTGTCTTCAACAACACCGCCMGATACGTCGATCAGGGTGGAGGCAAGC 12818 Query 363833 GCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTG 363892 |||| || |||| || || | ||||| || || ||||| |||| ||| | | Sbjct 12819 GCAAGGGAAGCATTGCCATTTACTTGGAGCCCTGGCACGCAGATATCTTTGCCTTTTTAG 12878 Query 363893 AGCTCCGGAAAAA-CACGGGAA--AAGAGGAATTGCGTGCACGTGATCTGTTCTATGCAC 363949 | || || ||||| |||||||| ||| || || ||||||||| |||| || | | Sbjct 12879 ATCTTCGCAAAAACCACGGGAACGAAGCCGA---TCGCGCACGTGATTTGTTTTACTCTC 12935 Query 363950 TTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTT 364009 | ||| | |||||| || ||| | || || |||| || ||| | | | | Sbjct 12936 TCTGGATCCCTGACCTGTTCATGGAACGTGTCAAGGCCAACGGGACATGGACGTTGATGT 12995 Query 364010 GCCCACACGAATGTCCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACG 364069 | || |||| || || ||||| ||||| || | || | | | |||| Sbjct 12996 GTCCCGACGAGTGCCCCGGTCTCCCCGATTGCCACGGACARGAGTTCAAGGAATTGTACG 13055 Query 364070 AAAAGTATGAATCGGAGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTG 364129 ||||||| || || || |||| ||| | ||||||| || ||| |||| ||||| | Sbjct 13056 AAAAGTACGAGAAAGAAGGCAAGGGTCGCCAAACAATTCAGGCGCAGCAGCTCTGGTTCG 13115 Query 364130 CCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCA 364189 | ||| |||| |||||| | || |||||||| || || ||| ||||||| ||| |||| Sbjct 13116 CAATCTTGGACTCGCAGGTCGAAACAGGAACCCCTTACATGGTGTACAAGGATCACTGCA 13175 Query 364190 ACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAGAGC-AACCTATGTACCGAG 364248 || |||||| || || || || | || || |||| | | | ||||||||||||||| Sbjct 13176 ACAACAAGTCGAATCAACAAAACTTGGGAACCATTC-GTTGTTCGAACCTATGTACCGAG 13234 Query 364249 ATTATTGAATACACCGCTCCCGACGAGACTGCCGTATGTAACCTTGC 364295 ||| || | ||||| |||| || || |||||||| || |||||||| Sbjct 13235 ATTGTTCAGTACACTTCTCCAGAGGAAACTGCCGTTTGCAACCTTGC 13281 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303335247559418