Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq456 96.9 3e-15 seq141 95.1 1e-14 >seq456 Length=31050 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 24000 TTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAACGACACCATC 24059 |||||||| || | ||||| || | || ||| | || || || | |||||||||| Sbjct 6642 TTTGTAAAGACCCTGACTGGCAAGACCATCACCCTGGACGTGGAACCGTCCGACACCATC 6701 Query 24060 GAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAACAGAGACTG 24119 || | |||||| ||||| ||||| ||||| || |||||||| || ||| | || Sbjct 6702 GACAACGTCAAAACCAAGATCCAGGACAAGGAAGGAATTCCTCCCGACCAGCAGCGTCTC 6761 Query 24120 ATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAACATTCAAAAA 24179 || | | ||| |||||| | || |||| | | | | | ||||| || ||||| || || Sbjct 6762 ATCTTTGCCGGAAAGCAATTGGAGGATGGCCGCACCCTGAGCGACTACAACATCCAGAAG 6821 Query 24180 GAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||||| || |||| || ||| | | ||| | ||||| Sbjct 6822 GAATCCACCCTTCACTTGGTGCTTCGCTTGCGGGGAGG 6859 >seq141 Length=126064 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || || || | || ||||| | || || |||| |||||| ||| | Sbjct 116928 ATGCAAATCTTCGTCAAGACCCTCACCGGAAAGACCATCACTCTCGATGTCGAG-CCATC 116986 Query 24051 G-ACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 | |||| ||||| | ||||| ||||| ||||| ||||| || || || ||||| Sbjct 116987 GGACACGATCGACAACGTCAAGACCAAGATCCAGGACAAGGAAGGAATCCCACCGGATCA 117046 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 || | || || | | ||| |||||| | || |||| ||| | || ||||| || Sbjct 117047 GCAACGTCTTATCTTTGCCGGAAAGCAATTGGAGGATGGTCGAACTCTGAGTGATTACAA 117106 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 ||| ||||| ||||| || | ||||| || | |||||||||||||| Sbjct 117107 CATCCAAAAGGAATCCACCCTGCATTTGGTCCTGCGATTGAGAGGAGGA 117155 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429930241410345