Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq110 138 1e-27 seq456 120 3e-22 seq108 120 3e-22 seq141 118 1e-21 seq386 98.7 9e-16 seq3 95.1 1e-14 >seq110 Length=137954 Score = 138 bits (152), Expect = 1e-27 Identities = 296/435 (68%), Gaps = 18/435 (4%) Strand=Plus/Plus Query 46168 TTTGCGATTGTGGAGGGCGTCtttttttCTGGCAGTTTTGCCGCCATCTTTTACATCAAA 46227 |||||| | |||||||| ||||||| || || || || ||||||||||| |||| Sbjct 11334 TTTGCG-TCGTGGAGGGAATCTTTTTCTCGGGGAGCTTCTGCGCCATCTTTTGGCTCAAG 11392 Query 46228 ACCAAGGGCATCATGCCCGGCCTGACGTTTAGCAACGAGCTGATATCGCGCGACGAGGGC 46287 | ||| |||||||||||||| | ||| ||||||||| || |||||||||||||| Sbjct 11393 AAGCGCGGCCTCATGCCCGGCCTGGCCTTTTCCAACGAGCTCATCTCGCGCGACGAGGGA 11452 Query 46288 CTGCATACGGACTTTGCGTGTCTCTACTATAACACTCGCGTGCACGACAAGCTTGCGCCC 46347 || || |||||||| || | ||| |||| | || | ||||||| || ||| Sbjct 11453 CTCCACTGCGACTTTGCCTGCATGCTCTACAACAAGC---TGGTCAACAAGCTCGCCCCC 11509 Query 46348 GA---CACCGTGCTGAGCATGTTCAAGGAGGCGGTGGCCATTGAGAAGGAGTTTTTTACG 46404 || || |||| ||| || ||| | || || | ||| || ||||| || | | Sbjct 11510 GAGCGCATCGTG--GAG-ATTGTCACCAACGCCGTCGACATCGAAAAGGAATTCGTCAGC 11566 Query 46405 GCCGCACTGCCCGCTGCCCTGCTGGGCATGAACGCACAGTCAATGTGCGACTACATCGAG 46464 | ||| || || | | || | ||||||||| | || ||| | ||||||||| Sbjct 11567 GACGCCCTCCCGGTAGAGCTCATCGGCATGAACTCGAAGCTCATGCAGCAGTACATCGAG 11626 Query 46465 TTTGTAGCGGACCGACTGCTCGT-GC---AGCTTCACCAGCCGAAGCATTTTCACGCGCG 46520 || || ||||| ||||| || || | | | ||| ||||| | || | | Sbjct 11627 TTCTGCGCCGACCGCCTGCTGGTCGCCCTGGGTGCCCCA----AAGCACTACCAGACCCC 11682 Query 46521 CAATCCATTTGAGTTTATGAACAACATCTCCCTGGAGGGCAAAACTAATTTTTTCGAAAA 46580 ||| || ||||||| ||| | | ||||| ||| |||| || || || |||||||| || Sbjct 11683 CAACCCCTTTGAGTGGATGGAGATGATCTCGCTGCAGGGAAAGACCAACTTTTTCGAGAA 11742 Query 46581 GCGCGTCGGCGAGTA 46595 ||||||||| || || Sbjct 11743 GCGCGTCGGGGAATA 11757 >seq456 Length=31050 Score = 120 bits (132), Expect = 3e-22 Identities = 161/224 (72%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || ||||| || ||||| || || | ||| || ||||| || |||||||| |||||| Sbjct 6859 CCTCCCCGCAAGCGAAGCACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGCTC 6800 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||||| | ||||| || || |||| | |||||||||||| ||||| Sbjct 6799 AGGGTGCGGCCATCCTCCAATTGCTTTCCGGCAAAGATGAGACGCTGCTGGTCGGGAGGA 6740 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 |||||||| ||||| ||| || |||| | || | || |||| | || | | Sbjct 6739 ATTCCTTCCTTGTCCTGGATCTTGGTTTTGACGTTGTCGATGGTGTCGGACGGTTCCACG 6680 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTG 131231 || | ||| | ||| || || || || || ||||| |||||||| Sbjct 6679 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTTACAAAAATCTG 6636 >seq108 Length=147947 Score = 120 bits (132), Expect = 3e-22 Identities = 369/558 (66%), Gaps = 35/558 (6%) Strand=Plus/Minus Query 145640 ttACAAACTGCCGTCTCCTC-GGCGTCGCTGTATTGTACGATCTCGGCGCACAAATTGCT 145698 || ||||| || || ||||| || | | |||| || || ||||||| || | || Sbjct 13275 TTGCAAACGGCAGTTTCCTCTGGAGAAG-TGTACTGAACAATCTCGGTACATAGGTTCGA 13217 Query 145699 ACATTTGATGGTTCCCAGATTTTGCTGATT--ACTTTTCCTGTTGCACGCGTCCTTGTAG 145756 ||| |||||||||| ||||| ||||| |||| | ||||||| |||||||| Sbjct 13216 ACAACGAATGGTTCCCAAGTTTTGTTGATTCGACTTGT--TGTTGCAGTGATCCTTGTAC 13159 Query 145757 AGCATGTACGGTCCGCCAGTCTCCACCTGCGTCTCCACGATA---AAACGGTGCAAGTCC 145813 | |||||| || || || || ||||||| |||| ||| || | | || | | Sbjct 13158 ACCATGTAAGGGGTTCCTGTTTCGACCTGCGAGTCCAAGATTGCGAACCAGAGC---TGC 13102 Query 145814 TGCGCACGCACCTGCTGCTGGTAGCGGCCCT---CTTCTT---CGTATTTCCTGTAGAGC 145867 ||||| | | || | | ||| |||| |||||| |||| || ||| | Sbjct 13101 TGCGCCTGAAT----TGTTTG--GCGACCCTTGCCTTCTTTCTCGTACTTTTCGTACAAT 13048 Query 145868 TCCTCAAACGCGGAACCGTAGCAATCGGACAGGCCGGGACACTTGTTGGGACACATCAGC 145927 |||| ||| | |||| |||||||| || ||||| |||| || ||||||||||| | Sbjct 13047 TCCTTGAACTCYTGTCCGTGGCAATCGGGGAGACCGGGGCACTCGTCGGGACACATCAAC 12988 Query 145928 GACCATACGCCGTTGGCGTTGACGCGCTCCATAAACAAATCTGGCACCCACAGCGCGTAC 145987 | |||| |||||||| ||||| || ||||| |||| || || | ||| || | ||| Sbjct 12987 GTCCATGTCCCGTTGGCCTTGACACGTTCCATGAACAGGTCAGGGATCCAGAGAGAGTAA 12928 Query 145988 ATCAAGTCGCGCGCTTTGCAATC--CTCAGCACCCATG--TTTCGCTTCAAATTAAGCAC 146043 | ||| || || || || ||| || | ||| || ||| || | ||| | Sbjct 12927 AACAAATCACGTGC---GCGATCGGCTTCGTTCCCGTGGTTTTTGCGAAGATCTAAAAAG 12871 Query 146044 ACTATAGATGTCCGCGTGCCACGGTTCAATATAGACGGCGAGGGCTCCTTTTCGTTTG-- 146101 | | |||| || |||||||| || || | || | ||| | | ||| || || ||| Sbjct 12870 GC-AAAGATATCTGCGTGCCAGGGCTCCAAGTAAATGGCAATGCTTCCCTTGCGCTTGCC 12812 Query 146102 -CCACCCTGGTCCACGTGACGTACCATGTTGTTAAAGACGCGCACCATGGGCTCGACGCC 146160 |||||||| || |||| | | ||||||| ||||| |||| |||||| ||| ||| Sbjct 12811 TCCACCCTGATCGACGTATCKGGCGGTGTTGTTGAAGACACGCAACATGGGGACGATGCC 12752 Query 146161 GCTGGCTACGCCGTTCGT 146178 ||| | ||||| || Sbjct 12751 ATTGGATGTACCGTTGGT 12734 >seq141 Length=126064 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || | ||| ||||| || ||||| | ||| || |||||||| ||||||||||| ||| Sbjct 117154 CCTCCTCTCAATCGCAGGACCAAATGCAGGGTGGATTCCTTTTGGATGTTGTAATCACTC 117095 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || ||||| | ||||| || || |||| | ||| ||||| ||||| ||| Sbjct 117094 AGAGTTCGACCATCCTCCAATTGCTTTCCGGCAAAGATAAGACGTTGCTGATCCGGTGGG 117035 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 |||||||| ||||| ||| || ||||| | || | || || | | ||||| Sbjct 117034 ATTCCTTCCTTGTCCTGGATCTTGGTCTTGACGTTGTCGATCGTGTCCGATGGCTCGACA 116975 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 |||| || | ||| || ||||| || || || ||||| || |||||| Sbjct 116974 TCGAGAGTGATGGTCTTTCCGGTGAGGGTCTTGACGAAGATTTGCATG 116927 >seq386 Length=39556 Score = 98.7 bits (108), Expect = 9e-16 Identities = 156/224 (70%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || || | ||| |||||||| || | || || |||||||| || ||||| ||||| Sbjct 11432 CCTCCACGAAGACGAAGCACTAAGTGAAGAGTAGATTCCTTTTGGATATTGTAGTCGCTT 11373 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| | || || | ||||| || || | || || | |||||| |||||||| Sbjct 11372 AGGGTCCTTCCATCTTCCAATTGCTTTCCAGCAAAAATCAATCTCTGCTGATCCGGAGGA 11313 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 |||||||| ||||| ||| || ||||| | || | || || | | ||||| Sbjct 11312 ATTCCTTCCTTGTCCTGGATCTTGGTCTTGACATTGTCAATGGTGTCCGAAGGCTCGACA 11253 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTG 131231 || | || | || || ||||| | |||||||||||||||||| Sbjct 11252 TCCAACGTGATTGTCTTGCCGGTCAAAGTTTTTACGAAAATCTG 11209 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 131019 ACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGA 131078 ||| || || || || | || || |||||||| |||||||| || |||| |||||| Sbjct 11877 ACGGAGGACCAAGTGAAGCGTGGATTCCTTTTGGATGTTGTAGTCACTCAAGGTGCGGCC 11818 Query 131079 GTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTT 131138 ||| || || ||||| || || | || || | |||||| || || ||||||||||| || Sbjct 11817 GTCTTCCAGTTGCTTTCCAGCAAAAATCAATCTCTGCTGATCAGGTGGGATTCCTTCCTT 11758 Query 131139 GTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAAC 131198 ||| ||| || ||| | | || | ||||| | | || | ||| | || | Sbjct 11757 GTCCTGGATCTTGGTCTTCACGTTATCAATGGTATCAGACGGTTCAACGTCCAGTGTGAT 11698 Query 131199 GGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 ||| ||||| || || || || || || || ||||| Sbjct 11697 GGTCTTACCAGTGAGTGTCTTCACAAAGATTTGCAT 11662 >seq3 Length=497493 Score = 95.1 bits (104), Expect = 1e-14 Identities = 141/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || || | ||| || || || || | ||| || |||||||| ||||||||||||||| Sbjct 135391 CCTCCTCGGAGACGAAGAACCAAGTGAAGGGTGGATTCCTTTTGGATGTTGTAATCGCTC 135332 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| || || | ||||| || || |||| | ||| || || || |||||| Sbjct 135331 AAGGTGCGTCCATCTTCCAATTGCTTTCCGGCAAAGATAAGACGTTGTTGATCAGGAGGG 135272 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 |||||||| ||||| ||| || ||||| | || | ||| || | | ||||| Sbjct 135271 ATTCCTTCCTTGTCCTGGATCTTGGTCTTGACGTTGTCAATAGTGTCCGATGGCTCGACA 135212 Query 131188 TCGACGGTAACGGTTTTACC 131207 || | || | ||| ||||| Sbjct 135211 TCAAGAGTGATGGTCTTACC 135192 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472006315724160