Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq141 96.9 2e-15 seq3 86.0 4e-12 >seq141 Length=126064 Score = 96.9 bits (106), Expect = 2e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 || |||||||| |||| |||||||| || ||| |||||||| || ||||||||| | Sbjct 117154 CCTCCTCTCAATCGCAGGACCAAATGCAGGGTGGATTCCTTTTGGATGTTGTAATCACTC 117095 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | | || | || || ||||| ||||||||||| || || ||||| ||||| | ||| Sbjct 117094 AGAGTTCGACCATCCTCCAATTGCTTTCCGGCAAAGATAAGACGTTGCTGATCCGGTGGG 117035 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||||| |||||| || || ||| || || | || || || || || Sbjct 117034 ATTCCTTCCTTGTCCTGGATCTTGGTCTTGACGTTGTCGATCGTGTCCGATGGCTCGACA 116975 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || | || || || || || || | ||| || ||||| || |||||| Sbjct 116974 TCGAGAGTGATGGTCTTTCCGGTGAGGGTCTTGACGAAGATTTGCATG 116927 >seq3 Length=497493 Score = 86.0 bits (94), Expect = 4e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 || |||| | ||| | ||||| ||||| ||| |||||||| || |||||||| | Sbjct 135391 CCTCCTCGGAGACGAAGAACCAAGTGAAGGGTGGATTCCTTTTGGATGTTGTAATCGCTC 135332 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 || ||| | || || ||||| ||||||||||| || || ||||||||||| | ||| Sbjct 135331 AAGGTGCGTCCATCTTCCAATTGCTTTCCGGCAAAGATAAGACGTTGTTGATCAGGAGGG 135272 Query 38211 ACGCCTTCTTTGTCC 38225 | ||||| |||||| Sbjct 135271 ATTCCTTCCTTGTCC 135257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334942713696269