Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq3 224 1e-53 seq108 217 2e-51 seq134 123 3e-23 seq110 82.4 1e-10 >seq3 Length=497493 Score = 224 bits (248), Expect = 1e-53 Identities = 508/754 (67%), Gaps = 8/754 (1%) Strand=Plus/Minus Query 62755 TGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAG 62814 ||| ||||| || || || ||||| | | |||| |||||| || || || ||||| || Sbjct 139838 TGCAAGATTGCATACAGCAACCTCTTCTTCGTCCGTATATTGGATAATTTCTGTGCATAG 139779 Query 62815 ATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTT 62874 |||||| || | || ||||| | ||| | ||| ||||| |||| ||| |||||||| Sbjct 139778 ATTACTGCATTGAATTGTTCCAATATTCTTTTGGTTACTTTTTTCATTAGCGGCATCCTT 139719 Query 62875 ATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGAC 62934 ||| || ||| | ||||| || ||||| || || ||||| | ||| || ||| || | Sbjct 139718 ATATAGCATGTAAGGAGTTCCTGTTTCGATTTGGGATTCCAGAATTGCGGACCATACCTC 139659 Query 62935 TCGAGCCTTTAT-TATAGATTTGTATCTCTTTTCTCTTTCGTATAGTGTATACAATCGTT 62993 ||| || || | || ||| | |||| |||||||| | ||| | | | Sbjct 139658 TCGGGCAGGCATCTGGCGAACA-TATTTTCCTTCTTTTTCGTATTTTTCATATAGTTCCT 139600 Query 62994 CGAACTCGTCTCCCCAAACATTGTCC-AGTCCAGGACATTCATCCGGACACATCAACGAC 63052 | || || | ||| | || | | || ||||| |||| ||| |||||||||| | Sbjct 139599 CAAAYTCTTTTCCGCTG-CACTCTGGGAGGCCAGGGCATTGATCGGGACACATCAGACTC 139541 Query 63053 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 63112 || | | | || | || |||||||||||||| | |||||| ||||| || | |||| Sbjct 139540 CAGTTTTCATCGTTCTCTACTCGTTTCATAAACAAATCAGGGATCCATAGGCCGTAAAAT 139481 Query 63113 AGATCTCTGGTTCTATGTTCCTCGTTTCCTGT-ATTCTTTTTAAGATCGAGGAACG-CCA 63170 ||||||| | || ||||| || ||||| || |||||||| |||| | ||||| | | Sbjct 139480 AGATCTCGAGCTCGCTGTTCTTC-TTTCCCGTGGTTCTTTTTCAGAT-TAAGAACGTCGA 139423 Query 63171 TAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTC 63230 ||| || |||||||| ||||| | ||| | || | | |||||||| || |||| Sbjct 139422 AAATGTCCGAATGCCAGGGTTCAATGTAAACAGCAAATGCACCAGGCCGCTTTCCACCTC 139363 Query 63231 CCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGG 63290 | ||||| | |||||| || || || ||||| | | ||| |||| | ||||||| Sbjct 139362 CTTGATCAACGTATCTCGCTGTCACATCGTAAACGCGAAGCATAGGAACCAGTCCATTGG 139303 Query 63291 ATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGAC 63350 | ||||| || || ||| || || || |||||||| | | | Sbjct 139302 AAGTACCTCGTGTACCCTTGATGGGAGACCCCCTAGCTCGAATATTGTGCACGCTCAATC 139243 Query 63351 CTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCT 63410 | ||||| || || ||| || || | |||||||| ||||| |||||||| |||||| Sbjct 139242 CAATTCCACCAGCAGATTTGGATATGACAGCGCATCGCTTTAATGTATCATATATGCCCG 139183 Query 63411 CTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTC 63470 || ||| || |||| | || | ||||| || || | || || || | |||| Sbjct 139182 AAATTGAATCGTCACTCATTTGAACCAAGAAACAACTCGATAGCTGAGGATGAGTCGTTC 139123 Query 63471 CCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAA 63504 | | || ||||| |||||||| || || ||||| Sbjct 139122 CAGAATGAAATAGTGTAGGAGATGCATGGGTAAA 139089 >seq108 Length=147947 Score = 217 bits (240), Expect = 2e-51 Identities = 560/847 (66%), Gaps = 10/847 (1%) Strand=Plus/Minus Query 62828 ATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAAT 62887 |||||||| || ||||||||||| ||| ||||| || |||||| || | ||| | Sbjct 13209 ATGGTTCCCAAGTTTTGTTGATTCGACTTGTTGTTGCAGTGATCCTTGTACACCATGTAA 13150 Query 62888 GGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGA-CGACTCGAGCCTTTAT 62946 || || || ||||| | ||| || || | || || ||||| | || | |||| || Sbjct 13149 GGGGTTCCTGTTTCGACCTGCGAGTCCAAGATTGCGAACCAGAGCTGCT-GCGCCTGAAT 13091 Query 62947 TATAGATTTGTATCTCTT---TTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTC 63003 | | || | | ||| |||| | ||||| | |||||| | |||||| | Sbjct 13090 TGT---TTGGCGACCCTTGCCTTCTTTCTCGTACTTTTCGTACAATTCCTTGAACTCYTG 13034 Query 63004 TCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTC 63063 ||| || | || || || || || || ||||||||||||| ||| |||| Sbjct 13033 TCCGTGGCAATCGGGGAGACCGGGGCACTCGTCGGGACACATCAACGTCCATGTCCCGTT 12974 Query 63064 ATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGT 63123 |||| || |||| ||| || || ||||| ||||| |||| ||| | ||| | | Sbjct 12973 GGCCTTGACACGTTCCATGAACAGGTCAGGGATCCAGAGAGAGTAAAACAAATCACGTGC 12914 Query 63124 TCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATG 63183 | || | ||||| || || || |||||| | || || | ||||| | || Sbjct 12913 GCGATCGGCTTCGTTCCCGTGGTTTTTGCGAAGATCTAAAAAGGCAAAGATATCTGCGTG 12854 Query 63184 CCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTA 63243 ||| || |||||||| ||||| || ||| || ||| ||| |||||||| | ||| Sbjct 12853 CCAGGGCTCCAAGTAAATGGCAATGCTTCCCTTGCGCTTGCCTCCACCCTGATCGACGTA 12794 Query 63244 TCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGT 63303 || |||||||| || | || | |||||| || | || |||||||||||||| ||||| Sbjct 12793 TCKGGCGGTGTTGTTGAAGACACGCAACATGGGGACGATGCCATTGGATGTACCGTTGGT 12734 Query 63304 CCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGC 63363 || || ||| | |||||||||||| || ||| ||||| ||||| ||||| Sbjct 12733 TCCACGAATGTAGGATTTACTGGCACGAATGTTGTGGGTTGCCAGACCAATTCCACCTGC 12674 Query 63364 CATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATC 63423 || || || | ||||| | || | || || |||||||| || || || || Sbjct 12673 GTACTTCGAAATCACGGCGCAGCTCTTGAGTGTGTCGTAGATGCCATCGATGGAGTCTTC 12614 Query 63424 CATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAA 63483 | |||| | | |||||||| ||||| || | | ||||| || || || | Sbjct 12613 CTTCATTGTCAACAGAAAACAAGAGGACATCTGAGGGTTGTTGGTTCCGGCGTTGAAGAG 12554 Query 63484 GGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTACGTCT-CAATAGCTG 63542 ||| || | || || || || || ||| || || || || |||| ||| | | | Sbjct 12553 GGTCGGTGTGGCATGGGTGAAGTATCGTTCCGAGAGGCCTTTATAGGTCTCCAAGACCCG 12494 Query 63543 AGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTT 63602 || ||||| | |||||||| || ||||| ||||| |||||| ||| |||| || Sbjct 12493 -CTCGATATCATCTCCGTGAATTCCAACGGCGACGCGCATCAACATGCACTGTGGTCGTT 12435 Query 63603 CAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAAT 63662 | |||||||| || | || | ||||||||| || || | |||||||||||||| | Sbjct 12434 CTGCGATCTTGCCATTGAGCTTRAGCAAGTAGGACTTCTCGAGGGTTTTAAAACCAAAGT 12375 Query 63663 AGTTGTA 63669 | | ||| Sbjct 12374 AATCGTA 12368 >seq134 Length=128537 Score = 123 bits (136), Expect = 3e-23 Identities = 267/391 (68%), Gaps = 20/391 (5%) Strand=Plus/Plus Query 32673 CAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGG 32732 || || || || ||||||| |||||||| ||||| ||||| || | |||||||| ||| Sbjct 121576 CAATGAAGTCCTTCGTCTCGACTAATTAGCTCGTTCGAAAAGGTTAAACCGGGCATAAGG 121635 Query 32733 CCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACT 32792 || | |||||| ||||| | ||||| |||| |||||||| || ||||| || || Sbjct 121636 CCTCTCTTTTTCAGCCAGTAAATGGAACAGAATGCACCAGAAAAAAAGATTCCCTCGACA 121695 Query 32793 GCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTG--TC--ATGTATCCACTTTTG 32848 || || ||||| | || | || | | ||| | || ||||| | ||| Sbjct 121696 GCAGCGAAGGCCACGAGCCGTTCAGCGAAGGAAGCGTCGGATCCGATGTACCG----TTG 121751 Query 32849 AGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGT-CTCTA-TA---GCATTAAAGAGA 32903 ||||| | |||||||||| ||| || | || | | | || || ||| || Sbjct 121752 GGCCCATTTTGCCTTCTTTT-----CAACGCTTGGTACGCGAGTATGCGCCGAAAATAGG 121806 Query 32904 TAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAA 32963 | | | || || | | ||| |||||||||||||| | || || |||| | Sbjct 121807 AGCTCTCTATCTTTTGGGTTTGTAATGTATGTATCAATCAACAAACAGTAAGTTTCTTGA 121866 Query 32964 TGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGT-AC 33022 || ||| |||| ||||||||||||||||| |||||||||| ||||||| | |||| || Sbjct 121867 TGGATGCTTTCCATGGCCATTTGAAATCCATAGAAGCATCGTGCCTCGGGCA-CTGTAAC 121925 Query 33023 TTCTGTACAAAATCGTTCTGCTAAATTTTCA 33053 ||| ||| |||| ||| || || |||||| Sbjct 121926 ATCTCGACAGAATCTTTCGGCCAAGTTTTCA 121956 >seq110 Length=137954 Score = 82.4 bits (90), Expect = 1e-10 Identities = 105/141 (74%), Gaps = 3/141 (2%) Strand=Plus/Minus Query 32661 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 32720 || || || |||||||| || |||||||| | || | ||||||||||| | || Sbjct 11472 CAGGCAAAGTCGCAGTGGAGTCCCTCGTCGCGCGAGATGAGCTCGTTGGAAAAGGCCAGG 11413 Query 32721 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAAAGAA 32779 |||||||| ||||| ||||| || |||||||| |||| |||| | | | || || || || Sbjct 11412 CCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGG-CGCAGAAGCTCCCCGAGAAAAA 11354 Query 32780 AATTCCTTCTACTGCCGCAAA 32800 ||||| || || | |||||| Sbjct 11353 GATTCCCTCCAC-GACGCAAA 11334 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633623295480400