Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq386 143 2e-29 seq456 122 8e-23 >seq386 Length=39556 Score = 143 bits (158), Expect = 2e-29 Identities = 172/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| ||||| ||||| | || ||||| |||||||| | || || || |||| Sbjct 11661 AATGCAAATCTTTGTGAAGACACTCACTGGTAAGACCATCACACTGGACGTTGAACCGTC 11720 Query 25058 TGACACTATCGAGTCAC-TGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||| || || || | || ||||| || ||| ||||| ||||| || |||||||| | Sbjct 11721 TGATACCATTGA-TAACGTGAAGACCAAGATCCAGGACAAGGAAGGAATCCCACCTGATC 11779 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | ||| | | |||||||| || || ||| | ||||| | ||||| || | || |||| Sbjct 11780 AGCAGAGATTGATTTTTGCTGGAAAGCAACTGGAAGACGGCCGCACCTTGAGTGACTACA 11839 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 | || ||||| ||||||||||| || || || || | ||||||||||||| Sbjct 11840 ACATCCAAAAGGAATCCACGCTTCACTTGGTCCTCCGTCTAAGAGGAGGAA 11890 Score = 113 bits (124), Expect = 4e-20 Identities = 163/228 (71%), Gaps = 4/228 (2%) Strand=Plus/Plus Query 25002 CAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGAC 25061 || || || ||||| ||||||||||| || | ||||| | || || ||| | || ||| Sbjct 11209 CAGATTTTCGTAAAAACTTTGACCGGCAAGACAATCACGTTGGATGTCGAGCCTTCGGAC 11268 Query 25062 ACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAAC 25119 || || || || || ||| || ||| ||||| ||||| ||||| || || || | Sbjct 11269 ACCATTGA--CAATGTCAAGACCAAGATCCAGGACAAGGAAGGAATTCCTCCGGATCAGC 11326 Query 25120 AGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATA 25179 || | | |||||||| || || ||||| ||||||| | || | |||| ||||||| Sbjct 11327 AGAGATTGATTTTTGCTGGAAAGCAATTGGAAGATGGAAGGACCCTAAGCGACTACAATA 11386 Query 25180 TTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 | ||||| ||||| || || || |||||||| | || | ||||||| Sbjct 11387 TCCAAAAGGAATCTACTCTTCACTTAGTGCTTCGTCTTCGTGGAGGAA 11434 Score = 105 bits (116), Expect = 6e-18 Identities = 166/233 (71%), Gaps = 6/233 (3%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| ||||| ||||| | || || || | ||||| | || || ||| | || Sbjct 11433 AATGCAAATCTTTGTCAAGACCCTCACGGGAAAGACTATCACGTTGGATGTCGAGCCTTC 11492 Query 25058 TGACACTATCGAGTCACTG--AAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 |||||||| || || || ||| | || | ||| ||||| ||||| || |||||||| Sbjct 11493 GGACACTATTGA--CAATGTCAAGACCAAGATTCAG-GACAAGGAAGGAATCCCACCTGA 11549 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 || ||| | | |||||||| || || ||||| ||||||| | || | |||| || Sbjct 11550 TCAGCAGAGATTGATTTTTGCTGGAAAGCAATTGGAAGATGGAAGGACCCTAAGCGACTA 11609 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 ||||||||| || || ||||| || || | || || | || | ||||||| Sbjct 11610 CAATATTCAGAAGGAGTCCACTCTGCACCTGGTCCTTCGTCTTCGTGGAGGAA 11662 >seq456 Length=31050 Score = 122 bits (134), Expect = 8e-23 Identities = 156/213 (73%), Gaps = 8/213 (4%) Strand=Plus/Plus Query 25002 CAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGAC 25061 || || ||||||||||| |||| || || ||||||| | || ||||| |||| ||| Sbjct 6636 CAGATTTTTGTAAAGACCCTGACTGGCAAGACCATCACCCTGGACGTGGAACCGTCCGAC 6695 Query 25062 ACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || ||||| |||| || | || ||| ||||| ||||| ||||| || ||||| Sbjct 6696 ACCATCGACAACGTCA---AAAC-CAAGATCCAGGACAAGGAAGGAATTCCTCCCGACCA 6751 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| | || |||||||| || ||||| || |||| ||||| || |||| ||||| Sbjct 6752 GCAGCGTCTCATCTTTGCCGGAAAGCAATTGGAGGATGGCCGCACCCTGAGCGACTACAA 6811 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || |||||||| || || || ||||| Sbjct 6812 CATCCAGAAGGAATCCACCCTTCACTTGGTGCT 6844 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433322195977685