Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_008296.2 Length=177300 Score E Sequences producing significant alignments: (Bits) Value seq217 670 0.0 >seq217 Length=78499 Score = 670 bits (742), Expect = 0.0 Identities = 793/1067 (74%), Gaps = 6/1067 (1%) Strand=Plus/Plus Query 166042 ACTTGGGAATCCTTCTGCGAATGGGTTACCTCTACCAACAACCGTCTTTATGTTGGTTGG 166101 || |||||| |||| | | ||| | || ||| ||||||| ||||| | |||||| Sbjct 40569 ACGTGGGAAAAATTCTCCAACTGGATCACAAGCACCGACAACCGCCTTTACATCGGTTGG 40628 Query 166102 TTTGGCACACTGATGATTCCAACTCTGTTGGCAGCAACCATC-TGTTTCATCGTCGCTTT 166160 || || || | ||| | |||||||| | || ||| | ||| || ||||| || || Sbjct 40629 TTCGGTACTATCATGTTCCCAACTCTTCTTGCCGCAGC-ATCATGCTTCATTACTGCATT 40687 Query 166161 CGTAGCGGCACCTCCTGTCGATATCGATGGGATCCGTGAGCCCGTAGCAGGCTCTCTAAT 166220 | || ||||||||||| || || || || ||||| || || || || || ||||| | Sbjct 40688 TATTGCCGCACCTCCTGTGGACATTGACGGAATCCGCGAACCTGTTGCCGGATCTCTTCT 40747 Query 166221 GTATGGTAACAACATCATCTCTGGTGCTGTTGTCCCCTCCTCCAACGCAATTGGTCTTCA 166280 || ||||| ||||||||| | || |||| |||| || | ||||||||| || | || Sbjct 40748 TTACGGTAATAACATCATCACCGGGTCTGTCATCCCTTCTTMCAACGCAATCGGGATGCA 40807 Query 166281 CTTCTATCCCATCTGGGAAGCAGCATCACTTGATGAATGGCTTTATAACGGTGGTCCTTT 166340 |||||| ||| | |||||||| || || | || |||||| | || ||||| || || | Sbjct 40808 CTTCTACCCCGTTTGGGAAGCTGCCTCCATGGACGAATGGTTGTACAACGGAGGACCCTA 40867 Query 166341 CCAGCTCGTAGTCTTCCACTTCCTCATCGGCATCTATGCCTACATGGGTCGTGAATGGGA 166400 ||| | || || | |||||||| |||| | | | |||||||| ||||| ||||| Sbjct 40868 CCAATTGGTTGTGATGCACTTCCTTCTCGGAGTTGCTTCGTACATGGGCCGTGAGTGGGA 40927 Query 166401 ATTGTCTTACCGCCTCGGTATGCGTCCTTGGATTTGCGTAGCATACTCTGCACCTGTTGC 166460 | | || || |||||||| |||||||||||||||| || |||| ||| ||||||||||| Sbjct 40928 ACTTTCGTATCGCCTCGGAATGCGTCCTTGGATTTTTGTTGCATTCTCCGCACCTGTTGC 40987 Query 166461 AGCAGCATCCGCAGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAAT 166520 ||| || |||| |||||||| ||| || | || ||||| |||||| || | || Sbjct 40988 AGCCGCCACCGCTGTCTTCCTCACCTACCCCATTGGGCAAGGAAGTTTCTCAGATGGCAT 41047 Query 166521 GCCCCTGGGTATCAGTGGCACCTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACAT 166580 ||| || |||||||| || |||||||||| |||| | |||||||| || ||||||||||| Sbjct 41048 GCCTCTTGGTATCAGCGGAACCTTCAACTTCATGTTGGTCTTCCAGGCCGAGCACAACAT 41107 Query 166581 CCTCATGCACCCCTTCCATATGCTGGGTGTAGCAGGTGTATTCGGTGGGTCACTTTTCTC 166640 ||| |||||||| | |||||| || || |||||||| ||||| || || | ||||| Sbjct 41108 CCTTATGCACCCGCTTCATATGGCCGGAGTTGCAGGTGTCTTCGGAGGATCTTTGTTCTC 41167 Query 166641 GGCAATGCACGGCAGTCTCGTTACTTCCTCGCTCGTCCGTGAGACCACTGAAACTGAGTC 166700 || |||||||| ||| ||||||||||| | ||||||| ||||| |||| || || Sbjct 41168 CGCCATGCACGGGTCTCTTGTTACTTCCTCTTTGATCCGTGAAACCACCGAAAACGAATC 41227 Query 166701 TCAAAACTATGGTTACAAGTTTGGTCAAGAAGAAGAGACCTACAACATCGTGGCTGCTCA 166760 || | || ||||||||||| || ||||| || ||||||||||| || || ||||| Sbjct 41228 CACCAATAACGGATACAAGTTTGGCCAGGAAGAGGAAACCTACAACATTGTCGCCGCTCA 41287 Query 166761 TGGTTACTTCGGTCGCCTGATCTTCCAATACGCTTCCTTCAACAACTCTCGCTCGCTGCA 166820 || ||||| || || || |||||||||||||| || ||||||||||| || | || || Sbjct 41288 CGGGTACTTTGGACGTCTCATCTTCCAATACGCGTCGTTCAACAACTCGCGTGCTCTTCA 41347 Query 166821 CTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTTTACTGCTCTTGGTGTTAGCAC 166880 ||||||| | || |||||||| | |||||||||| || || | ||||| ||| Sbjct 41348 CTTCTTCTTAGCTCTCTGGCCTGTATTGGGTATCTGGTGCACCGCCATGGGTGTCTCCAC 41407 Query 166881 CATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCG 166940 |||||| |||||||||||||| ||||||||||||||| | ||||||| |||| || Sbjct 41408 CATGGCCTTCAACCTCAACGGATTCAACTTCAACCAGGCTGTCATCGACTCCGAGGGACG 41467 Query 166941 TGTGCTCAACACTTGGGCAGATGTCCTCAACCGTGCTGGTCTGGGTATGGAAGTAATGCA 167000 ||| ||||||| ||||| || | |||||||||| | ||| || ||||| || ||||| Sbjct 41468 TGTCATCAACACCTGGGCCGACATAATCAACCGTGCCGATCTTGGAATGGAGGTCATGCA 41527 Query 167001 CGAGCGTAATGCTCACAACTTCCCTCTGGATCTTGCTGCTGCTGAG-TCCACTCCTGTGG 167059 ||| ||||||||||| ||||| ||||| ||| | ||| ||| ||| | | | ||||| | Sbjct 41528 CGAACGTAATGCTCATAACTTTCCTCTTGATTTGGCTTCTGGCGAGATTCTC-CCTGTCG 41586 Query 167060 CACTCACCGCACCTGCAATCGGTTGATACTCGGATTCCTA-ATAAAC 167105 || | || || || ||| ||||| || | | || || |||||| Sbjct 41587 CAATGGAGGCCCCAGCCATC-GTTGAGGCTTGAACTCGTATATAAAC 41632 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 567224207650400