Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq110 91.5 2e-13 >seq110 Length=137954 Score = 91.5 bits (100), Expect = 2e-13 Identities = 367/568 (65%), Gaps = 10/568 (2%) Strand=Plus/Minus Query 93080 TTGTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTG 93139 ||||| | | ||| ||||||||| || | || ||||| || || || | ||| ||| Sbjct 11484 TTGTAGAGCATGCAGGCAAAGTCGCAGTGGAGTCCCTCGTCGCGCGAGATGAGCTCGTTG 11425 Query 93140 CTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAA-CT 93198 || | | || || | || || || |||||||||||||| || | ||| || || Sbjct 11424 GAAAAGGCCAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGC-GCAGAAGCT 11366 Query 93199 ACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGC 93258 || || ||||| || || |||||| | ||| || || || || ||||| | || Sbjct 11365 CCCCGAGAAAAAGATTCCCTCCACGACGCAAAAGGCGACGCACCGCTCCGCAAAGCTGGC 11306 Query 93259 GGAATTACTGCT--GATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGT 93316 ||| | | | ||| | | ||||| ||| |||||| | || || | Sbjct 11305 C--ATTCCCGAGTCGCACCACTGGAGGGCCCAGCGGGCCTTTTTCCGCACGCAGGGGACC 11248 Query 93317 GTTTCGATAGCGTTAAATAGGTA-ATCTCGCTCGTCCGAATCTCGTATGTATGTATCGAT 93375 || ||||| |||| | || | || ||| || ||||| ||||| || ||||| Sbjct 11247 GTGTCGATGGCGTGGAGGAGACGGAGCTT-CTCCTCGGAATCCTTGATGTACGTGTCGAT 11189 Query 93376 TAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACA 93435 | || || || | || || |||| ||||||| || || ||||| |||||||| || Sbjct 11188 GAGGAGCGAGTAGGTCTCCGAGTGGATGTTCTCCACCGCGATCTGGAAGCCGTAGAAGCA 11129 Query 93436 TCTAGCTTCCGTGATCTGCACTTCT-TGAGAAAATCTCTCTACGAGATTTTCATTGACTA 93494 | | || | ||| | || | | ||| | ||| | | || ||||| ||||| | Sbjct 11128 GCGTCCCTCGGGCGACTGGAGCTCGGTCATAAAGT-TCTGTGCCAGGTTTTCGTTGACGA 11070 Query 93495 TACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTT 93554 | || || ||||| ||||| || |||| || || | || || ||| ||| | || Sbjct 11069 TCCCGTCCGATGCCGCAAAGAAGGCCAGGATGTGGCTGATGAAGTGTCGCTCGTTGTCGG 11010 Query 93555 TAAGCTTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACG 93614 ||||| ||||||||| | || ||||||| ||||| | ||||| || | Sbjct 11009 ACAGCTTGACCCAATCGGCCATGTCCGAGCCGAGATCGATCTCTTCCGCGGTCCAGAAGG 10950 Query 93615 ATGCTTCTGCTTTTTTGTACATATCCCA 93642 | || || || ||||||||||| ||||| Sbjct 10949 AGGCCTCGGCCTTTTTGTACATTTCCCA 10922 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556853150124760