Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq3 158 1e-33 seq141 131 1e-25 seq22 91.5 1e-13 >seq3 Length=497493 Score = 158 bits (174), Expect = 1e-33 Identities = 439/659 (67%), Gaps = 25/659 (4%) Strand=Plus/Minus Query 129708 ATTGCAGACGGCACTTTCGTTTTTGTCACTGTACTCGACAATTTCGGCGCACAAATTACT 129767 |||||| || ||| || | || ||| | || | || |||||| | ||| | |||||| Sbjct 139832 ATTGCATACAGCAACCTCTTCTTCGTCCGTATATTGGATAATTTCTGTGCATAGATTACT 139773 Query 129768 ATTTTTAATGGTGCCCAAATGCTTTTGATTACTTTT--CATGTTGCAAGCATCTTTGTAC 129825 || ||| || || | || |||||| |||||||| ||| | || ||||| || || Sbjct 139772 GCATTGAATTGTTCCAATATTCTTTTGGTTACTTTTTTCAT-TAGCG-GCATCCTTATAT 139715 Query 129826 ATCATGTACGGCGTGCCCGTTTCGACTTGCGTTTCGACAATGGTCCTGAACAAG--TCTC 129883 | |||||| || || || ||||||| ||| | ||| | ||| | | || || |||| Sbjct 139714 AGCATGTAAGGAGTTCCTGTTTCGATTTGGGATTCCAGAATTG--CGGACCATACCTCTC 139657 Query 129884 GAGCCTTGATCTGTCTTACAAATTTGCCACATTTCTCGTATGCCACATACAGTTGTTCAA 129943 | || ||||| | ||| |||| || ||| |||||| |||| |||| |||| Sbjct 139656 GGGCAGGCATCTGGCGAACATATTTTCCTTCTTTTTCGTATTTTTCATATAGTTCCTCAA 139597 Query 129944 ATTCTGAGCCG-TGTACGGTGTCGAGCAACGGCGATTCACGCGGACACATCAAACTCCAC 130002 | ||| ||| || || || || | ||| ||| | |||||||||| |||||| Sbjct 139596 AYTCTTTTCCGCTGCACTCTGGGAGGCCAGGGC-ATTGATCGGGACACATCAGACTCCAG 139538 Query 130003 ATTCCATCCGCTTCGACTCGTTTCATAAACAAATCGGGTACCCACAGGGCGTACAACAAA 130062 || |||| || |||||||||||||||||||| || | ||| ||| |||| || | | Sbjct 139537 TTTTCATCGTTCTCTACTCGTTTCATAAACAAATCAGGGATCCATAGGCCGTAAAATAGA 139478 Query 130063 TCTCG----CGCTTTTCTATCCTCGGCACCCAT-GTTACGTTTCAGTTCAAGGAAATCGT 130117 ||||| |||| |||| || | ||| | ||| |||||| | ||| | ||| Sbjct 139477 TCTCGAGCTCGCTGTTCT-TCTT----TCCCGTGGTTCTTTTTCAGATTAAGAACGTCGA 139423 Query 130118 AAATGTCGGCGTGCCACGGTTCAACATAAATTGCCATTGCGCCCTTCCGTTT---GCCCC 130174 ||||||| | ||||| ||||||| |||| || | ||| || ||| || || | Sbjct 139422 AAATGTCCGAATGCCAGGGTTCAATGTAAACAGCAAATGCACCAGGCCGCTTTCCACCTC 139363 Query 130175 CTTGGTCAACGTGGCGCACGGCATTGTTGTAGACTCGCAACATTGCCTCCAATCCGTTGG 130234 |||| ||||||| | | | | | ||| || || | ||| | ||| ||| |||| Sbjct 139362 CTTGATCAACGTATCTCGCTGTCACATCGTAAACGCGAAGCATAGGAACCAGTCCATTGG 139303 Query 130235 CCGTGCCGTTTGTGCTCTCAATGAAACTGCCACGAGCCCGAACGTTATGAACGCTTAGAC 130294 || || ||| | || ||| | || | ||| |||| || || ||||| | | Sbjct 139302 AAGTACCTCGTGTACCCTTGATGGGAGACCCCCTAGCTCGAATATTGTGCACGCTCAATC 139243 Query 130295 CTATGCCGCCGCCAAATTTTGATATCAACGCGCAATCGC-GTAGCGTTTCATAAATGCC 130352 | || || || || |||| ||||| | |||| ||||| || || ||||| ||||| Sbjct 139242 CAATTCCACCAGCAGATTTGGATATGACAGCGC-ATCGCTTTAATGTATCATATATGCC 139185 Score = 118 bits (130), Expect = 9e-22 Identities = 146/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 22246 GGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAAAAA 22305 ||||| || |||||||||| || || | | || || | ||| | |||| || Sbjct 135192 GGTAAGACCATCACTCTTGATGTCGAGCCATCGGACACTATTGACAACGTCAAGACCAAG 135251 Query 22306 ATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAG 22365 || || |||||||| || || || || ||||||||||||||||| |||||||| || || Sbjct 135252 ATCCAGGACAAGGAAGGAATCCCTCCTGATCAACAACGTCTTATCTTTGCCGGAAAGCAA 135311 Query 22366 TTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACATTTA 22425 || || ||| |||||| | |||||||||||| ||||| ||||||||| | || || Sbjct 135312 TTGGAAGATGGACGCACCTTGAGCGATTACAACATCCAAAAGGAATCCACCCTTCACTTG 135371 Query 22426 GTTTTGCGATTGCGCGGAGG 22445 ||| | || | || ||||| Sbjct 135372 GTTCTTCGTCTCCGAGGAGG 135391 >seq141 Length=126064 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || || | ||||| || || ||||||| || || || | | Sbjct 116928 ATGCAAATCTTCGTCAAGACCCTCACCGGAAAGACCATCACTCTCGATGTCGAGCCATCG 116987 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| | |||| || || || |||||||| || || ||||| ||||| Sbjct 116988 GACACGATCGACAACGTCAAGACCAAGATCCAGGACAAGGAAGGAATCCCACCGGATCAG 117047 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||||||||| |||||||| || || || |||||| || || | ||||||||| Sbjct 117048 CAACGTCTTATCTTTGCCGGAAAGCAATTGGAGGATGGTCGAACTCTGAGTGATTACAAC 117107 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || ||||| ||||||||| | ||||| || |||||||| | ||||| Sbjct 117108 ATCCAAAAGGAATCCACCCTGCATTTGGTCCTGCGATTGAGAGGAGG 117154 >seq22 Length=300247 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || ||||||||||| || ||||| |||||||| || |||||||||||||| || || Sbjct 203493 AAGATCCAAGACAAGGAAGGAATTCCTCCCGATCAGCAGCGTCTTATATTTGCTGGAAAG 203552 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 || || |||||| || || | ||| || ||||| || || |||||||| | ||| Sbjct 203553 CAATTGGAGGATGGTCGTACTTTGAGCGACTATAACATCCAGAAGGAATCCACTCTTCAT 203612 Query 22423 TTAGTTTTGCGATTGCGCGGAGG 22445 || || | || | || ||||| Sbjct 203613 TTGGTGCTTCGTCTTCGTGGAGG 203635 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419722378136935