Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq110 154 3e-32 >seq110 Length=137954 Score = 154 bits (170), Expect = 3e-32 Identities = 552/833 (66%), Gaps = 40/833 (5%) Strand=Plus/Minus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 ||||| || || | ||| |||| ||| ||||| | |||||| | || |||||||| | | Sbjct 11739 TCGAAAAAGTTGGTCTTTCCCTGCAGCGAGATCATCTCCATCCACTCAAAGGGGTTGGGG 11680 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 | | ||| ||||| || || || || || | | |||||| || ||||| | Sbjct 11679 GTCTGGTAGTGCTTTGGGGCACCCAGGGCGACCAGCAGGCGGTCGGCGCAGAACTCGATG 11620 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATA-CGACAAGGAATTGCCTCACAGAT 251741 ||||| ||| || | ||||||||||| || | | || ||| || || | || Sbjct 11619 TACTGCTGCATGAGCTTCGAGTTCATGCCGATGAGCTCTACCGGGAGG-GCGTCGCTGAC 11561 Query 251742 GAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACC-TGTGC-CAGAGAC 251799 ||||||||||||| || | || || | ||||| || ||| || || | | | | Sbjct 11560 GAATTCCTTTTCGATGTCGACGGCGTTGGTGACAAT---CTCCACGATGCGCTCGGGGGC 11504 Query 251800 -AGCTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGTC 251858 |||||||| ||||||| ||| || | | |||| | ||| || |||||||| Sbjct 11503 GAGCTTGTTGACCAGCTTGTTGTAGAGCATGCAGGCAAAGTCGCAGTGGAGTCCCTCGTC 11444 Query 251859 GCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCA 251918 ||| ||||| ||||||||| | ||||||| ||||| | || || ||| ||||||| Sbjct 11443 GCGCGAGATGAGCTCGTTGGAAAAGGCCAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCA 11384 Query 251919 GAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGAC-ACACACCCATGCAACAA 251977 ||||| ||||| ||| || ||||| | | ||||| || || || | || || Sbjct 11383 AAAGATGGCGCAGAAGCTCCCCGAGAAAAAGATTCCCTCCACGACGCA-AAAGGCGACGC 11325 Query 251978 GGCGCTCAGCAAA--CGACTTGTCCTGCGAC-AAGAACTTCTGTGCCCATGCTGCCTTCT 252034 ||||| ||||| | | ||| | | | | ||| | ||||| || | | | | Sbjct 11324 ACCGCTCCGCAAAGCTGGCCATTCCCGAGTCGCACCACTGGAGGGCCCA-GCGGGCCTTT 11266 Query 252035 TTCCAACCGC-GGGGATTGTTTCGATTGCATCAAAGAGA--GAG-TTCCGCTCGGCATCG 252090 |||| ||| ||||| || ||||| || | | |||| ||| ||| ||||| | Sbjct 11265 TTCCGCACGCAGGGGACCGTGTCGATGGCGTGGAGGAGACGGAGCTTCTCCTCGGAA--- 11209 Query 252091 TCCTCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATGGATTCGTTGAAC 252150 |||| |||| || || | ||||| ||||| ||||||| |||||| ||| | | | Sbjct 11208 TCCTTGATGTACGTGTCGATGAGGAGCGAGTAGGTCTCCGAGTGGATG--TTC-TCCACC 11152 Query 252151 ---ATCTGGTAAGCATAGA---ATAGACGCGCGGAAGGGTCGGTGACTTCCGTGGAAAAG 252204 |||||| | | |||| | | | | ||| | | | | || || || |||| Sbjct 11151 GCGATCTGGAAGCCGTAGAAGCAGCGTCCCTCGG--GCGACTG-GAGCTCGGTCATAAAG 11095 Query 252205 TTGTTTGCAATGTTCTCCATCACCATGCCAT-CGCTGCCTGCAAAGAAGCCAAGAATGGT 252263 || | ||| | ||| || | || || || | || |||| ||||||||| | || ||| Sbjct 11094 TTCTGTGCCAGGTTTTCGTTGACGATCCCGTCCGATGCC-GCAAAGAAGGCCAGGATGTG 11036 Query 252264 CTTGATGAAGTGACGCTCATCGTCGTTGAGCTTGTCACGCCAGTCGGCAATGTCCTGATT 252323 |||||||||| ||||| | |||| |||||| | ||| ||||| |||||| || Sbjct 11035 GCTGATGAAGTGTCGCTCGTTGTCGGACAGCTTGAC---CCAATCGGCCATGTCC-GAGC 10980 Query 252324 C-AGAGGAACTTCTTCCACCGTCCAGAATGTGGACACCGCCTTCTTGTACATT 252375 | ||| | |||||| | |||||||| | || | | ||||| ||||||||| Sbjct 10979 CGAGATCGATCTCTTCCGCGGTCCAGAAGGAGGCCTCGGCCTTTTTGTACATT 10927 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027822327094259