Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq456 129 5e-25 seq386 107 2e-18 seq141 87.8 2e-12 seq3 86.0 5e-12 >seq456 Length=31050 Score = 129 bits (142), Expect = 5e-25 Identities = 145/194 (75%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || ||||| || || |||||||| ||||||| || || ||| || | ||| || || Sbjct 6829 GTGGATTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCCAATTGCTTTCCG 6770 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || ||||||||||||| ||||| |||||||| ||||| ||||| ||||| ||| Sbjct 6769 GCAAAGATGAGACGCTGCTGGTCGGGAGGAATTCCTTCCTTGTCCTGGATCTTGGTTTTG 6710 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | |||||||| | ||| ||||||| ||| | || ||||| ||||| || Sbjct 6709 ACGTTGTCGATGGTGTCGGACGGTTCCACGTCCAGGGTGATGGTCTTGCCAGTCAGGGTC 6650 Query 114366 TTTACAAAAATCTG 114379 |||||||||||||| Sbjct 6649 TTTACAAAAATCTG 6636 >seq386 Length=39556 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| || | | ||||| || | |||||||| ||||| || ||||| ||| Sbjct 11435 ATTCCTCCACGAAGACGAAGCACTAAGTGAAGAGTAGATTCCTTTTGGATATTGTAGTCG 11376 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || | || | |||||| | ||| || ||||| | || | | ||| || |||||| Sbjct 11375 CTTAGGGTCCTTCCATCTTCCAATTGCTTTCCAGCAAAAATCAATCTCTGCTGATCCGGA 11316 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||| ||||| ||||| || | | |||| |||||| | | ||| Sbjct 11315 GGAATTCCTTCCTTGTCCTGGATCTTGGTCTTGACATTGTCAATGGTGTCCGAAGGCTCG 11256 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTG 114379 || |||| || | || |||||||||| ||||||||| |||||||| Sbjct 11255 ACATCCAACGTGATTGTCTTGCCGGTCAAAGTTTTTACGAAAATCTG 11209 >seq141 Length=126064 Score = 87.8 bits (96), Expect = 2e-12 Identities = 146/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 114174 ACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCA 114233 || ||||| | || ||||| ||||| ||||||||||| |||| ||| ||| ||| || Sbjct 117136 ACCAAATGCAGGGTGGATTCCTTTTGGATGTTGTAATCACTCAGAGTTCGACCATCCTCC 117077 Query 114234 AGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCA 114293 | ||| || || || |||| ||||| || || ||||| || || ||||| ||||| Sbjct 117076 AATTGCTTTCCGGCAAAGATAAGACGTTGCTGATCCGGTGGGATTCCTTCCTTGTCCTGG 117017 Query 114294 ATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTG 114353 ||||| || | | || | ||||| | | ||||| || | || | || || Sbjct 117016 ATCTTGGTCTTGACGTTGTCGATCGTGTCCGATGGCTCGACATCGAGAGTGATGGTCTTT 116957 Query 114354 CCGGTCAGAGTTTTTACAAAAATCTGCATGG 114384 ||||| || || || || || || ||||||| Sbjct 116956 CCGGTGAGGGTCTTGACGAAGATTTGCATGG 116926 >seq3 Length=497493 Score = 86.0 bits (94), Expect = 5e-12 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 114173 AACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTC 114232 ||| || || | || ||||| ||||| |||||||||||||||| || || |||||| Sbjct 135374 AACCAAGTGAAGGGTGGATTCCTTTTGGATGTTGTAATCGCTCAAGGTGCGTCCATCTTC 135315 Query 114233 AAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTC 114289 | ||| || || || |||| ||||| ||||| || ||||| || ||||| ||||| Sbjct 135314 CAATTGCTTTCCGGCAAAGATAAGACGTTGTTGATCAGGAGGGATTCCTTCCTTGTC 135258 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420128772693588