Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq110 286 7e-72 seq108 188 1e-42 >seq110 Length=137954 Score = 286 bits (316), Expect = 7e-72 Identities = 574/843 (68%), Gaps = 21/843 (2%) Strand=Plus/Plus Query 42309 ATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTGGCCAAGGAC 42368 |||||||| ||||| || |||| ||||||||| || ||||| || || | | |||| Sbjct 10928 ATGTACAAAAAGGCCGAGGCCTCCTTCTGGACCGCGGAAGAGATCGATCTCGGCTCGGAC 10987 Query 42369 ACGGCCGGCTGGGAGTCA--CTGTCTGAGAACGAAAAGTTTTTCCTCAAAAACATACTGG 42426 | ||||| |||| ||| ||||| || ||||| ||| ||| |||| |||| Sbjct 10988 ATGGCCGATTGGG--TCAAGCTGTCCGACAACGAGCGACACTTCATCAGCCACATCCTGG 11045 Query 42427 CCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATGAAAG 42486 ||||||| || || || ||||| || ||||| || |||||||| | || |||| | Sbjct 11046 CCTTCTTTGCGGCATCGGACGGGATCGTCAACGAAAACCTGGCACAGAACTTTATGACCG 11105 Query 42487 AGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACGTGC 42546 || | |||| |||| ||||||||||||||||||||||| || | |||||| | | Sbjct 11106 AGCTCCAGTCGCCCGAGGGACGCTGCTTCTACGGCTTCCAGATCGCGGTGGAGAACATCC 11165 Query 42547 ACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGTAACG 42606 |||| ||| ||| | || || ||||||||||| |||| ||| ||| | Sbjct 11166 ACTCGGAGACCTACTCGCTCCTCATCGACACGTACATCAAGGATTCCGAGGAGAAGCTCC 11225 Query 42607 GGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCA 42666 | || || | ||||| || ||| | |||||| | ||| ||||| |||||| ||| Sbjct 11226 GTCTCCTCCACGCCATCGACACGGTCCCCTGCGTGCGGAAAAAGGCCCGCTGGGCCCTCC 11285 Query 42667 ACTGGATCGAGAGTCCCGA--CGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGT 42724 | ||| | || || || || | || | ||| || || |||||| || ||| Sbjct 11286 AGTGG--TGCGACTCGGGAATGGCCAGCTTTGCGGAGCGGTGCGTCGCCTTTTGCGTCGT 11343 Query 42725 CGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAG-AAGGTGT 42783 ||||| ||||| |||||||| |||| | ||||||| ||||||||| || || | Sbjct 11344 GGAGGGAATCTTTTTCTCGGGGAGCTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCT 11403 Query 42784 CGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGG 42843 | |||||||| || |||| || ||||| |||||| | |||||||| || || | | Sbjct 11404 C-ATGCCCGGCCTGGCCTTTTCCAACGAGCTCATCTCGCGCGACGAGGGACTCCACTGCG 11462 Query 42844 ACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGGGTCC 42903 |||||||||| | || ||| | | | || |||||| | | ||||| || Sbjct 11463 ACTTTGCCTG---CATGCTCTACAACAAGCTGGTCAACAAGCTCGCCCCCGAGCGCATCG 11519 Query 42904 GGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCG 42963 || || |||| | ||||| || ||||| ||||| ||| ||| | | || || | Sbjct 11520 TGGAGATTGTCACCAACGCCGTCGACATCGAAAAGGAATTCGTCAGCGACGCCCTCCCGG 11579 Query 42964 TGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGCCGACC 43023 | || ||||||||||| | |||||| |||||||| ||| | |||||||| Sbjct 11580 TAGAGCTCATCGGCATGAACTCGAAGCTCATGCAGCAGTACATCGAGTTCTGCGCCGACC 11639 Query 43024 ATCTCCTGTGCCAGATGGGTCTCAGCCGC----CTCTACAACACGCCGTGCCCCTTCGAC 43079 || ||| | ||||| ||| | | |||| | || || |||||| || Sbjct 11640 GCCTGCTGGTCGCCCTGGGT----GCCCCAAAGCACTACCAGACCCCCAACCCCTTTGAG 11695 Query 43080 TTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCCGAC 43139 | ||||||| |||||| || |||| |||||||||||||||||||||||||||| || Sbjct 11696 TGGATGGAGATGATCTCGCTGCAGGGAAAGACCAACTTTTTCGAGAAGCGCGTCGGGGAA 11755 Query 43140 TAC 43142 ||| Sbjct 11756 TAC 11758 >seq108 Length=147947 Score = 188 bits (208), Expect = 1e-42 Identities = 947/1481 (64%), Gaps = 51/1481 (3%) Strand=Plus/Minus Query 243993 CTTCGATGTTCTGCACCGAGCCCTTGTGGACGATGAGCTGGGTGCGCATGTTA-TCGTTC 244051 ||||||| ||||||||||| || || ||||||| || |||| | || | |||||| Sbjct 13967 CTTCGATCTTCTGCACCGATCCACGGTCAGCGATGAGGCGGTTGCGGA-GTGACTCGTTC 13909 Query 244052 CACAGGCCCAAGCGCTC-CAGCGCCTCGACCAGGTGCCTGTTCACCACCTGAAACTCTCC 244110 || | || ||||| ||| | | || |||| |||| || | | ||||||||| Sbjct 13908 CAAATACC-AAGCGAGGTCAGATCGCGCAACAAGTGCTTGTTGACAATCGTAAACTCTCC 13850 Query 244111 CGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATGCTCTCCGTGTTGCC 244170 | || || || || | ||||| ||| | | | |||||| | || || |||| || Sbjct 13849 TGCCAAAACACGTCGGTTGTAGATATTGGAGGTAAATGGCTCGGTACTTTCGTTGTTACC 13790 Query 244171 CAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAGACTGTTCCTCACGCC 244230 || |||||| || ||| || || ||||| || | |||| ||| |||||||| || Sbjct 13789 CAATATCTGGGCGGTGGATGCGGTGGGCATTGGAGCTACCAACAGGGAGTTCCTCATTCC 13730 Query 244231 GTGCCTCTGGATGCGGAGTCTG-AGCTCGTTCCAGTCCCACATGCCCGAGAGGTCCTCGC 244289 |||| || | | | | || | | | ||||| ||| ||| | | | Sbjct 13729 GTGC-TCGGCAATCTCTGCCTTCAATTTGGCCCAGTYCCAA-----CGATCGCT----GG 13680 Query 244290 GTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCGTAGG 244349 || | | |||||||| |||||| || || |||| ||| ||||| || || Sbjct 13679 GTGTRACGCCCCACAAGTCAAATTGTAGTTTTCCCTGGCTCACGGGAGACCCGGGATAAC 13620 Query 244350 TCGGGTAGGGACCGTCGCGCTGGGCCAGCTTACAGCTCTC-GTCGAGGGCGGCGTAGTAG 244408 || |||| | || || | || || | || ||| | || ||| | || |||| Sbjct 13619 TCTCGTAGTGTCCCTCAGTTTTCGCAAGATCGCAACTCGCAGTACAGG-CACCGAAGTAA 13561 Query 244409 ATGGTCTCGAAGATCATCTTG--TTCATGTCGCGGGCCTTGCCGCAGGTGAAGGGGATGC 244466 |||||||| || || || | || || || | ||| | || |||||||| Sbjct 13560 ATGGTCTCAAAAATG-TCGCGGTTTAATTGAGCTG-CCTCGGGAGAGTCGAAGGGGAG-- 13505 Query 244467 CCATCATCATG---AAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTC 244523 | | | |||| || | || |||| |||||| || || | || || || | ||| Sbjct 13504 -CTTGAGCATGGCAAAAGCATCTGCCAATCCCTGAACACCAAGACCAATTGGACGGTGCT 13446 Query 244524 GCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGA 244583 | |||| ||| |||||||||| | ||||| || |||| |||||| || | || | Sbjct 13445 TCATGTTCGAGTATTTGGCTTCGGGAATAGGGTAGAAATTGCGGTCGATGACTCTATTCA 13386 Query 244584 GGTTGCGGGTGA---TCATGCGGACGACGTCGGCCAGCAGCTGAAAGTCGTACTCGTAGG 244640 |||| | ||| | |||| || | |||| ||| | |||||| | | | Sbjct 13385 GGTTTCTGGTCAAAATCAT-CGCAACCTGTCGA--AGCTTTTCGAAGTCGAAAATGAGTG 13329 Query 244641 GATCCTCGGCGATG-GTGATCCTCACAAACTCGTTGAGGGCGACGCTGGCCAGGTTGCAG 244699 | | | | | || | | || | || |||| | ||| || |||||| |||||||| Sbjct 13328 GGCCATTGTTGGTGAGAGGTCGT-ACCAACTTGGAGAGACTGATGCTGGCAAGGTTGCAA 13270 Query 244700 ACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTG 244759 ||||| ||||| | |||||||| ||||||||||| || ||||| || Sbjct 13269 ACGGCAGTTTCCTCTGGAGAAGTGTACTGAACAATCTCGGTACATAGGTTCGAACAACGA 13210 Query 244760 ATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAG 244819 ||||| |||| || || ||||| |||||| ||||||| |||||||| | |||| | Sbjct 13209 ATGGTTCCCAAGTTTTGTTGATTCGACTTGTTGTTGCAGTGATCCTTGTACACCATGTAA 13150 Query 244820 GGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACC 244879 || || || |||| ||| | | | | || | |||||| | | |||| | Sbjct 13149 GGGGTTCCTGTTTCGACCTGCGAGTCCAAGATTGCGAACCAGAGCTGCTGCGCCTGAATT 13090 Query 244880 GTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTCGAACTCGGGGCCC 244939 || |||| ||||||| ||| |||||| ||||| ||| |||||| | || Sbjct 13089 GTTTGGCGACCCTTGCCTTCTTTCTCGTACTTTTCGTACAATTCCTTGAACTCYTGTCCG 13030 Query 244940 CAGACCTCGTCTAGGCCGGGGCACGACGCCGGG-CACATGAGACTCCACTCGCCGCCGTC 244998 | ||| || ||||||||| || |||| ||||| | |||| ||| | | Sbjct 13029 TGGCAATCGGGGAGACCGGGGCACT-CGTCGGGACACATCAACGTCCATGTCCCGTTGGC 12971 Query 244999 CTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCT 245058 |||||| | | |||||| ||||| ||||||||||| | | || | || | || | Sbjct 12970 CTTGACACGTTCCATGAACAGGTCAGGGATCCAGAGAGAGTAAAACAAATCAC--GTGCG 12913 Query 245059 CTGCTCGTC--CGAGCCAGTG-TTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTG 245115 | | ||| | || || ||| || || | || || |||||| |||||| || |||| Sbjct 12912 C-GATCGGCTTCGTTCCCGTGGTTTTTGCGAAGATCTAAAAAGGCAAAGATATCTGCGTG 12854 Query 245116 CCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCACCAT 245175 ||||||||||| ||| | || | | || |||||| || ||||| || || Sbjct 12853 CCAGGGCTCCAAGTAAATGGCAATGCTTCCCTTGCGCTTGCCTCCACCCTGATCGACG-- 12796 Query 245176 CCTCTCGAGCGC----GTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAGAGTGGCCGT 245231 | || ||| |||||||| |||| | || || ||||| || || |||| Sbjct 12795 --TATCKGGCGGTGTTGTTGAAGACACGCAACATGGGGACGATGCCATTGGATGTACCGT 12738 Query 245232 TGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGACATGCCTAGTCCGC 245291 |||| || ||||||| || | | | |||| | | | || || | ||| | Sbjct 12737 TGGTTCCACGAATGTAGGATTTACTGGCACGAATGTTGTGGGTTGCCAGACCAATTCCAC 12678 Query 245292 CGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCCCTCCATGCTGT 245351 | |||| ||| || || | |||||||||||||| ||||| ||||| || ||| || Sbjct 12677 CTGCGTACTTCGAAATCACGGCGCAGCTCTTGAGTGTGTCGTAGATGCCATCGATGGAGT 12618 Query 245352 CCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGGCTGCACGAGTTGA 245411 | |||||| | | |||||| || ||||||| ||| || ||| | | | | ||||| Sbjct 12617 CTTCCTTCATTGTCAACAGAAAACAAGAGGACATCTGAGGGTTGTTGGTTCCGGCGTTGA 12558 Query 245412 ACAGAGTGGGGCTGGCGTGGGTAAAGTAGCGGCTCGAGAGG 245452 | || || || |||| ||||| ||||| || ||||||| Sbjct 12557 AGAGGGTCGGTGTGGCATGGGTGAAGTATCGTTCCGAGAGG 12517 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944326227140240