Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq386 125 2e-23 seq141 116 9e-21 seq3 113 1e-19 >seq386 Length=39556 Score = 125 bits (138), Expect = 2e-23 Identities = 150/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 288271 TGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGT 288330 |||| |||| ||| |||||||| || ||||| | ||||| |||||||| | ||| Sbjct 11864 TGAAGCGTGGATTCCTTTTGGATGTTGTAGTCACTCAAGGTGCGGCCGTCTTCCAGTTGC 11805 Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTC 288390 ||||| || || |||| | ||| ||| | |||||||||||| || |||||||| || Sbjct 11804 TTTCCAGCAAAAATCAATCTCTGCTGATCAGGTGGGATTCCTTCCTTGTCCTGGATCTTG 11745 Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450 | |||||||| || || | ||| || ||| || || || ||||| ||||| || || Sbjct 11744 GTCTTCACGTTATCAATGGTATCAGACGGTTCAACGTCCAGTGTGATGGTCTTACCAGTG 11685 Query 288451 AGAGTCTTGACGAATATCTGCATT 288474 || ||||| || || || |||||| Sbjct 11684 AGTGTCTTCACAAAGATTTGCATT 11661 Score = 102 bits (112), Expect = 2e-16 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 ||| || || || | ||| || || || | ||| || || || ||||| |||||| Sbjct 11661 TCCTCCACGAAGACGAAGGACCAGGTGCAGAGTGGACTCCTTCTGAATATTGTAGTCGCT 11602 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 || || | ||| ||||| ||||| ||||| || || |||| | ||| ||| | ||| Sbjct 11601 TAGGGTCCTTCCATCTTCCAATTGCTTTCCAGCAAAAATCAATCTCTGCTGATCAGGTGG 11542 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 ||||||||| || ||||| || || | || || || || |||| || | || || Sbjct 11541 GATTCCTTCCTTGTCCTGAATCTTGGTCTTGACATTGTCAATAGTGTCCGAAGGCTCGAC 11482 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || | |||||| ||||| || || || |||||||| || || |||||| Sbjct 11481 ATCCAACGTGATAGTCTTTCCCGTGAGGGTCTTGACAAAGATTTGCATT 11433 Score = 100 bits (110), Expect = 7e-16 Identities = 157/225 (70%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 ||| || || || | ||| || | |||| || ||| ||||||||||| |||||| Sbjct 11433 TCCTCCACGAAGACGAAGCACTAAGTGAAGAGTAGATTCCTTTTGGATATTGTAGTCGCT 11374 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 || || | ||| ||||| ||||| ||||| || || |||| | ||| ||| || Sbjct 11373 TAGGGTCCTTCCATCTTCCAATTGCTTTCCAGCAAAAATCAATCTCTGCTGATCCGGAGG 11314 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 |||||||| || |||||||| || | || || || || || | || | || || Sbjct 11313 AATTCCTTCCTTGTCCTGGATCTTGGTCTTGACATTGTCAATGGTGTCCGAAGGCTCGAC 11254 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTG 288470 || | |||||| ||||| ||||||| ||| || ||||| ||||| Sbjct 11253 ATCCAACGTGATTGTCTTGCCGGTCAAAGTTTTTACGAAAATCTG 11209 >seq141 Length=126064 Score = 116 bits (128), Expect = 9e-21 Identities = 153/211 (73%), Gaps = 11/211 (5%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| |||||||| || || || || || || || || || ||||| ||||| || || Sbjct 117119 TTCCTTTTGGATGTTGTAATCACTCAGAGTTCGACCATCCTCCAATTGCTTTCCGGCAAA 117060 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 ||| ||||| || ||| |||||||||||| || |||||||| || | || ||||| Sbjct 117059 GATAAGACGTTGCTGATCCGGTGGGATTCCTTCCTTGTCCTGGATCTTGGTCTTGACGTT 117000 Query 288402 TTCTATAGAATCGCTCGAT---TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 || || | || |||| || || ||||| ||||| ||||| ||||| || ||||| Sbjct 116999 GTCGATCGTGTC---CGATGGCTCGACATCGAGAGTGATGGTCTTTCCGGTGAGGGTCTT 116943 Query 288459 GACGAATATCTGCAT-----TATGTTATTCT 288484 |||||| || ||||| |||||||||| Sbjct 116942 GACGAAGATTTGCATGGTGAGATGTTATTCT 116912 >seq3 Length=497493 Score = 113 bits (124), Expect = 1e-19 Identities = 148/204 (73%), Gaps = 6/204 (3%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 ||| || ||||| | ||| || | |||| ||| ||| |||||||| || || ||| Sbjct 135392 TCCTCCTCGGAGACGAAGAACCAAGTGAAGGGTGGATTCCTTTTGGATGTTGTAATCGCT 135333 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 | |||||||| ||||| ||||| ||||| || ||||| ||||| |||||| | || Sbjct 135332 CAAGGTGCGTCCATCTTCCAATTGCTTTCCGGCAAAGATAAGACGTTGTTGATCAGGAGG 135273 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGAT---TC 288422 ||||||||| || |||||||| || | || ||||| || |||| || |||| || Sbjct 135272 GATTCCTTCCTTGTCCTGGATCTTGGTCTTGACGTTGTCAATAGTGTC---CGATGGCTC 135216 Query 288423 TACTTCGAGCGTGATCGTCTTCCC 288446 || || || ||||| ||||| || Sbjct 135215 GACATCAAGAGTGATGGTCTTACC 135192 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179637789360122