Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq110 118 2e-21 >seq110 Length=137954 Score = 118 bits (130), Expect = 2e-21 Identities = 302/452 (67%), Gaps = 12/452 (3%) Strand=Plus/Plus Query 243289 TTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGT--TGAAGGTATTCTGTTT-TCCGGGAGT 243345 ||||| ||||| |||||||| | ||||| || ||| | ||| ||| || ||||| Sbjct 11312 TTTGCGGAGCGGTGCGTCGCCT---TTTGCGTCGTGGAGGGAATCTTTTTCTCGGGGAGC 11368 Query 243346 TTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAAC 243405 |||||||||||||||||||| ||| || | ||||| ||||| | | || ||| Sbjct 11369 TTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGCCTGGCCTTTTCCAAC 11428 Query 243406 GAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATG-TATTCAA- 243463 ||| ||||| ||||||||||| || ||| | || | || ||| | | ||| Sbjct 11429 GAGCTCATCTCGCGCGACGAGGGACTCCACTGCGACTTTGCCT-GC--ATGCTCTACAAC 11485 Query 243464 -AGCTCCAGAACAAGCTACCATTCGAAACGGTCAAACAAATCATCACAGAAGCAGTTGAA 243522 |||| |||||||| | ||| || | || |||| | || || || Sbjct 11486 AAGCTGGTCAACAAGCTCGCCCCCGAGCGCATCGTGGAGATTGTCACCAACGCCGTCGAC 11545 Query 243523 AACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAA 243582 | ||||||||||||| | ||||||| | || ||| || ||||||||||| | Sbjct 11546 ATCGAAAAGGAATTCGTCAGCGACGCCCTCCCGGTAGAGCTCATCGGCATGAACTCGAAG 11605 Query 243583 CTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAG 243642 |||||| ||||||||||| ||| ||||||||| | | |||| || ||| Sbjct 11606 CTCATGCAGCAGTACATCGAGTTCTGCGCCGACCGCCTGCTGGTCGCCCTGGGTGCCCCA 11665 Query 243643 AAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAA 243702 || ||| | || |||||||||| | |||||| | || ||||| || || || Sbjct 11666 AAGCACTACCAGACCCCCAACCCCTTTGAGTGGATGGAGATGATCTCGCTGCAGGGAAAG 11725 Query 243703 ACTAACTTCTTCGAAAAGCGTGTCAGTGATTA 243734 || ||||| ||||| ||||| ||| | || || Sbjct 11726 ACCAACTTTTTCGAGAAGCGCGTCGGGGAATA 11757 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102864470415650