Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq108 156 5e-33 seq110 109 7e-19 seq39 109 7e-19 >seq108 Length=147947 Score = 156 bits (172), Expect = 5e-33 Identities = 574/886 (65%), Gaps = 21/886 (2%) Strand=Plus/Minus Query 114511 AGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTG 114570 |||||||| | ||| || ||||| | || |||| |||||| |||||||| | ||| Sbjct 13249 AGTGTACTGAACAATCTCGGTACATAGGTTCGAACAACGAATGGTTCCCAAGTTTTGTTG 13190 Query 114571 ATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTG 114630 ||| ||||| |||| || ||||||||| | |||||| || || || || || || Sbjct 13189 ATTCGACTTGTTGTTGCAGTGATCCTTGTACACCATGTAAGGGGTTCCTGTTTCGACCTG 13130 Query 114631 GGACTTGAGAATAGCCTTCCAGACAT-CGGCGGCTGGCACAGT--GGCGTTGGCTCGCCC 114687 || | | || || ||||| | | ||| ||| | || |||| || ||| Sbjct 13129 CGAGTCCAAGATTGCGAACCAGAGCTGCTGCGCCTGA-ATTGTTTGGCGACC-CTTGCCT 13072 Query 114688 CTCCTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCC 114747 || | |||||||||| ||| | | | ||||| | || | || | ||| || Sbjct 13071 -TCTTTCTCGTACTTTTCGTACAATTCCTTGAACTCYTGTCCGTGGCAATCGGGGAGACC 13013 Query 114748 TGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACACGCTTCATGAA 114807 || || || || || | | | |||| || ||| ||||| | |||||| Sbjct 13012 GGGGCACTCGTCGGGACACATCAACGTCCATGTCCCGTTGGCCTTGACACGTTCCATGAA 12953 Query 114808 GAGGTCTGGGATCCAGAGAGCTGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTG 114867 ||||| ||||||||||||| | || | ||| || |||| | |||| | ||| || Sbjct 12952 CAGGTCAGGGATCCAGAGAGAGTAAAACAAATCACGTGCGCGATCGGCTTCGTTCCCGTG 12893 Query 114868 ATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGC 114927 || || | || |||||| | | |||||| |||||||| || |||| ||| | || Sbjct 12892 GTTTTTGCGAAGATCTAAAAAGGCAAAGATATCTGCGTGCCAGGGCTCCAAGTAAATGGC 12833 Query 114928 GATTGACCCCTTACGA---CGACCAGCCTGGTTTACATACCTCGCTGTGGCATTAAATAC 114984 || ||||| || | ||| |||| | || || | || ||| || || || Sbjct 12832 AATGCTTCCCTTGCGCTTGCCTCCACCCTGATCGACGTATCKGGCGGTGTTGTTGAAGAC 12773 Query 114985 GCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTATT 115044 || | ||| || | ||| |||| ||| || || || || ||||| || ||| | Sbjct 12772 ACGCAACATGGGGACGATGCCATTGGATGTACCGTTGGTTCCACGAATGTAGGATTTACT 12713 Query 115045 GGCTCTGACATCATGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCA 115104 ||| | | | ||| | || |||||| || ||||| |||| || || ||||| Sbjct 12712 GGCACGAATGTTGTGGGTTGCCAGACCAATTCCACCTGCGTACTTCGAAATCACGGCGCA 12653 Query 115105 CTCCGTGAGACTGCCGTAGATCCCGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGCA 115164 | |||| || ||||||| || ||||| ||||| |||| ||| | || || || Sbjct 12652 GCTCTTGAGTGTGTCGTAGATGCCATCGATGGAGTCTTCCTTCATTGTCAACAGAAAACA 12593 Query 115165 GCTCGACATTTGTGGCCTTGGTG-TACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGA 115223 ||||| || || ||| || | || |||||||||||||| ||||| || ||| ||| Sbjct 12592 AGAGGACATCTGAGGG-TTGTTGGTTCCGGCGTTGAAGAGGGTCGGTGTGGCATGGGTGA 12534 Query 115224 A----CATACCTTGGGACATCTTATCGTAGGTCTCCAAGA-CGGCGGGAATGTCTTCCCC 115278 | | | || | | | | ||| ||||||||||||| | || | || || || || Sbjct 12533 AGTATCGTTCCGAGAGGCCT-TTA---TAGGTCTCCAAGACCCGCTCG-ATATCATCTCC 12479 Query 115279 GTGAATACCGATCGAGACCCGCATAAACATGTATTGGGGTGTTTCCATCAGGATACCATC 115338 |||||| || | | ||| ||||| |||||| | || ||| ||| | | |||| Sbjct 12478 GTGAATTCCAACGGCGACGCGCATCAACATGCACTGTGGTCGTTCTGCGATCTTGCCATT 12419 Query 115339 GAGCCTCTGGAGGTAACTCTTCTCCAAGGTCTTGAGACCAAAATAA 115384 |||| | | | ||| |||||| | ||| || | |||||| ||| Sbjct 12418 GAGCTTRAGCAAGTAGGACTTCTCGAGGGTTTTAAAACCAAAGTAA 12373 >seq110 Length=137954 Score = 109 bits (120), Expect = 7e-19 Identities = 391/596 (66%), Gaps = 34/596 (6%) Strand=Plus/Minus Query 125752 CTTGCCGTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATT 125811 |||| |||| ||||| || ||||||||||| ||||| ||||| || | || ||| | Sbjct 11764 CTTGGCGTATTCCCCGACGCGCTTCTCGAAAAAGTTGGTCTTTCCCTGCAGCGAGATCAT 11705 Query 125812 CTCCATAAAATCAAATGGGTTC----TTTG--AGTTCCAAATTGTTGGCACCC----CAA 125861 |||||| | ||||| ||||| | || ||| | ||| ||||||| | | Sbjct 11704 CTCCATCCACTCAAAGGGGTTGGGGGTCTGGTAGTGCT---TTGG-GGCACCCAGGGCGA 11649 Query 125862 TCTGTTTGAGGAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCA 125921 | || || || || | | | |||| ||||||| ||| || ||||||| Sbjct 11648 CC------AGCAGGCGGTCGGCGCAGAACTCGATGTACTGCTGCATGAGCTTCGAGTTCA 11595 Query 125922 TACCGATGAGGT-TACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCT 125980 | |||||||| | ||| ||||| ||||| || ||| |||| || || || ||||| Sbjct 11594 TGCCGATGAGCTCTACC-GGGAGGGCGTCGCTGACGAATTCCTTTTCGATGTCGACGGCG 11536 Query 125981 TCCCGCACGATGGCGTGAATGGTGTCCACCCCAGGTCTATTGCGCAAAGTCTTGAAGAGT 126040 | || || | ||| || | | | ||| || | ||| |||| Sbjct 11535 TTGGTGACAATCTCCACGATGCGCTCGGGGGCGAGCTTGTTGACCAGCTTGTTGTAGAGC 11476 Query 126041 -TCCACGGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCA 126099 | || |||||| || |||||| |||||||| || |||||||| || || || ||| Sbjct 11475 ATGCA-GGCAAAGTCGCAGTGGAGTCCCTCGTCGCGCGAGATGAGCTCGTTGGAAAAGGC 11417 Query 126100 CAGTCCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAA 126159 ||| || |||||||| || |||||||| | ||| || || || || || |||||||| Sbjct 11416 CAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCGCAGAAGCTCCCCGAGAA 11357 Query 126160 GAAGATTCCCTCCACACACGC-GAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACT-TT 126217 |||||||||||||| |||| || || | | ||||| |||||| | || | | Sbjct 11356 AAAGATTCCCTCCAC-GACGCAAAAGGCGACGCACCGCTCCGCAAAGCTG-GCCATTCCC 11299 Query 126218 GTGTCAAACCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATC 126277 | ||| |||||| | ||||| | ||||||||| | || ||||| || | ||| Sbjct 11298 GAGTCGCACCACTGGAGGGCCCAGCGGGCCTTTTTCCGCACGCAGGGGACCGTGTCGATG 11239 Query 126278 GCTTCAAAGA---GTTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAG 126330 || | | || | ||||| || || ||| ||||||||| | || ||||| Sbjct 11238 GCGTGGAGGAGACGGAGCTTCTCCTCGGA---ATCCTTGATGTACGTGTCGATGAG 11186 >seq39 Length=234218 Score = 109 bits (120), Expect = 7e-19 Identities = 327/498 (66%), Gaps = 26/498 (5%) Strand=Plus/Minus Query 10775 ACGGTGATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATG 10834 || |||| ||| ||||| || ||||| || || || | || | || |||||||| || Sbjct 143389 ACAGTGACCTTTCGATCGAAACGACCAGGTCGAAGCAAAGCTTGATCRAGGATATCGATA 143330 Query 10835 CGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTA---TCAAAGCCATCCATCTCA 10891 || || || || || ||| || || || | |||| ||||| |||||||||||| Sbjct 143329 CGATTGGTGGCGGCAATGGTAATAATTCCKGG---GTTACCGTCAAAACCATCCATCTCA 143273 Query 10892 GTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATT--CGCGGGCAT-ACCACCCGCA 10948 | || || || || |||||||| ||||| ||||| | | | | ||||| || Sbjct 143272 ACAAGGATCTGGTTAATTGTTTGTTCACGTTCGTCATTACCTCCTCCTTGGCCACCTCCA 143213 Query 10949 CTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACACGGTTGATTTTCA 11008 ||||| ||||||||| ||||||||||||||||| | || || || || | Sbjct 143212 ---CGTTGGCGACCGACGGCATCAATTTCATCGATGAAGATAATGCAAGGGGCGTTCTTC 143156 Query 11009 CGGGCAACTTCAAAGATATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACA 11068 ||| | | || ||||| ||||||| ||| || ||||| || ||||| || || Sbjct 143155 TTGGCTTGTCCGAAAATATCACGGACTCGAGAGGCTCCAACACCGACGAACATCTCAACG 143096 Query 11069 AAATTGGCGGCGGAA-CATTG-----GATGAAGGGGACGTTGGATTCACCCGCGATGGCT 11122 || | | ||| || || |||||| || || | || || || | || Sbjct 143095 AATT------CAGAACCACTGATGGAGATGAACGGAACACCCGCCTCTCCAGCAACAGCC 143042 Query 11123 CGGGCGAGGAGGGTCTTCCCCGTCCCAGGTTTCCCTGCGAGAAGGGCACCACGTGGGATC 11182 ||||||||||||||| || || ||||| || | || | ||||||| ||||| Sbjct 143041 TTGGCGAGGAGGGTCTTACCGGTTCCAGGAGGTCCGTCAAGGATAACACCACGGGGGATA 142982 Query 11183 CTGGCACCACTTC-CAAAGTAGCGCTCAGGTTGTTTAAGGAAGTCCACGATTTCTTCCAA 11241 | |||| | ||| |||| |||||||| || | || || |||| || |||| Sbjct 142981 C-GGCAGCCGTTCTTGGTGTAGGCTTCAGGTTGCTTCAARAAATCGACGACCTCAGCCAA 142923 Query 11242 TTCATCCTTCGCAGCGTC 11259 |||| ||| || |||| Sbjct 142922 TTCAAGCTTTGCTCCGTC 142905 Score = 105 bits (116), Expect = 8e-18 Identities = 208/307 (68%), Gaps = 4/307 (1%) Strand=Plus/Plus Query 10766 GGTAGGGACACGGTGATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGG 10825 || ||| |||||||| ||| |||||||| || || || || | ||| || | || | Sbjct 140086 GGAAGGTCCACGGTGACCTTMCGATCAAATCGTCCGGGACGCAAGAGAGCTTGATCCAAA 140145 Query 10826 ATATCAATGCGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCC 10885 || || | ||||| || || || || | ||| || | | ||| || |||||| Sbjct 140146 ATGTCGACACGGTTGGTAGCAGCAATAGTGATGATACCGGGATTTCCATCGAATCCATCC 140205 Query 10886 ATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATT--CGCGGGCATACCAC 10943 ||||| ||| | |||||| | ||| ||||| |||||||| || ||| |||| || | Sbjct 140206 ATCTCCACCAAAATTTGATTCACGGTCTGTTCACGTTCATCGTTTCCGCCGGCAAAC--C 140263 Query 10944 CCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACACGGTTGAT 11003 | || | ||||| || || || || || |||||||| || | || ||||| | Sbjct 140264 CAGCGCCACGTTGACGTCCAACAGCATCGATCTCATCGATAAAGATAATGCACGGAGCRT 140323 Query 11004 TTTCACGGGCAACTTCAAAGATATCTCGGACTCTCTTGGCACCGACACCCACAAACATTT 11063 | | || | |||||||||| || || | |||||| ||||| |||||||| | Sbjct 140324 TCTTCTTTGCTTGTCCAAAGATATCGCGAACACGGGAGGCACCTACACCAACAAACATCT 140383 Query 11064 CCACAAA 11070 ||||||| Sbjct 140384 CCACAAA 140390 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597345393854920