Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq108 134 1e-26 seq456 107 2e-18 seq386 100 3e-16 >seq108 Length=147947 Score = 134 bits (148), Expect = 1e-26 Identities = 371/559 (66%), Gaps = 17/559 (3%) Strand=Plus/Minus Query 154595 GTTGCAAACGGCAATTTCTTCAGAACTACTGTATTGCACAATTTCTGCGCACAAATTACT 154654 ||||||||||||| |||| || | | | |||| || ||||| || | || | || Sbjct 13276 GTTGCAAACGGCAGTTTCCTCTGGAGAAGTGTACTGAACAATCTCGGTACATAGGTTCGA 13217 Query 154655 GCATCGAATGGTGCCCAGGTTTTTCTGATTCGATTTGATGTTGCATGCGTCTTTGTACAA 154714 || |||||||| |||| ||||| |||||||| ||| ||||||| || ||||||| Sbjct 13216 ACAACGAATGGTTCCCAAGTTTTGTTGATTCGACTTGTTGTTGCAGTGATCCTTGTACAC 13157 Query 154715 AATGTACGGGGTGCCCGTTTCCACTTGGGTTTCAATAATTGTGCGAAACAGA-CTTC-GC 154772 ||||| ||||| || ||||| || || | || | || |||||| |||| || | || Sbjct 13156 CATGTAAGGGGTTCCTGTTTCGACCTGCGAGTCCAAGAT--TGCGAACCAGAGCTGCTGC 13099 Query 154773 GCCTCAACTTGACAAGTAAATCGATT---TTCGCTCTCATATTGTTCGTACAGTTTTTCA 154829 |||| || ||| | | | || ||| |||| || | |||||||| || | Sbjct 13098 GCCTGAA-TTGTTTGGCGA--CCCTTGCCTTCTTTCTCGTACTTTTCGTACAATTCCTTG 13042 Query 154830 AACTCTAAACTGTACACGTCCGACAAACCGGGACAGCGGTCGGGACACATCAATGACCAC 154889 ||||| | || || | | |||||| || ||||||||||||||| | ||| Sbjct 13041 AACTCYTGTCCGTGGCAATCGGGGAGACCGGGGCACTCGTCGGGACACATCAACGTCCAT 12982 Query 154890 ATTTCGTTTTGTTGTACGCGTTTCATAAACAAATCCGGCACCCACAAAGCGTACAACAAA 154949 | |||| | || |||| ||| |||| || || | ||| | || ||| |||||| Sbjct 12981 GTCCCGTTGGCCTTGACACGTTCCATGAACAGGTCAGGGATCCAGAGAGAGTAAAACAAA 12922 Query 154950 TCACGCGCCTTTTTGTCTTCAGCGCCCATG--TTTCGCTTTAAATTCAAAAAATCATATA 155007 ||||| || | | |||| | ||| || ||| || | || ||||| || | | Sbjct 12921 TCACGTGCGCGATCGGCTTC-GTTCCCGTGGTTTTTGC-GAAGATCTAAAAAGGCAAAGA 12864 Query 155008 TGTCGGCGTGCCACGGCTCTAAATATACGGCCATCGCGCCTTTGCGTTT---TCCTCCTT 155064 | || |||||||| ||||| || || | ||| || || ||||| || ||| || | Sbjct 12863 TATCTGCGTGCCAGGGCTCCAAGTAAATGGCAATGCTTCCCTTGCGCTTGCCTCCACCCT 12804 Query 155065 GATCCACGTGACGCACACAATTATTGTACACGCGCAACAATGGTTCCACGCCGCTGGCCG 155124 |||| |||| | | || ||| | || ||||||| || | | ||| ||| | Sbjct 12803 GATCGACGTATCKGGCGGTGTTGTTGAAGACACGCAACATGGGGACGATGCCATTGGATG 12744 Query 155125 TGCCGTTGGTGCCACGTAT 155143 | |||||||| ||||| || Sbjct 12743 TACCGTTGGTTCCACGAAT 12725 >seq456 Length=31050 Score = 107 bits (118), Expect = 2e-18 Identities = 158/224 (71%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || ||||| | |||||| | |||| || ||||| || || |||||||| || Sbjct 6859 CCTCCCCGCAAGCGAAGCACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGCTC 6800 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | |||||| | || || | ||||| |||||| | ||||| |||||||||||||||||| Sbjct 6799 AGGGTGCGGCCATCCTCCAATTGCTTTCCGGCAAAGATGAGACGCTGCTGGTCGGGAGGA 6740 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 |||||||| || || || || || || || || | || || | ||||| Sbjct 6739 ATTCCTTCCTTGTCCTGGATCTTGGTTTTGACGTTGTCGATGGTGTCGGACGGTTCCACG 6680 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTG 64440 || | || | ||||||||| |||| || ||||| ||||| || Sbjct 6679 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTTACAAAAATCTG 6636 >seq386 Length=39556 Score = 100 bits (110), Expect = 3e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 |||||||| |||| || ||||| ||||| || ||||| || | ||| | | || Sbjct 11418 AAGCACTAAGTGAAGAGTAGATTCCTTTTGGATATTGTAGTCGCTTAGGGTCCTTCCATC 11359 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 ||| | ||||| || ||| |||| | | |||||| || |||||||||||||| || || Sbjct 11358 TTCCAATTGCTTTCCAGCAAAAATCAATCTCTGCTGATCCGGAGGAATTCCTTCCTTGTC 11299 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || || || ||| ||| || | || || | || || || | || | || Sbjct 11298 CTGGATCTTGGTCTTGACATTGTCAATGGTGTCCGAAGGCTCGACATCCAACGTGATTGT 11239 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTG 64440 ||||||||||||||||||||||||||| || Sbjct 11238 CTTGCCGGTCAAAGTTTTTACGAAAATCTG 11209 Score = 98.7 bits (108), Expect = 1e-15 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| || ||||| ||||| |||||||| || | |||||| ||||||| || ||| Sbjct 12092 TGAAGGGTAGATTCCTTTTGGATGTTGTAGTCACTCAAGGTGCGGCCGTCTTCCAGTTGC 12033 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 || || ||| | || || |||||||| || |||||||||||||| || || || || || Sbjct 12032 TTTCCAGCAAAGATAAGACGCTGCTGATCAGGAGGAATTCCTTCCTTGTCCTGGATCTTG 11973 Query 64361 TGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTC 64420 ||| || || | |||||| | ||||| || | || | ||||| || || Sbjct 11972 GTCTTCACGTTGTCAATGGTATCAGATGGTTCCACATCCAGTGTAATAGTCTTACCAGTG 11913 Query 64421 AAAGTTTTTACGAAAATTTGCATT 64444 | || || || || ||||||||| Sbjct 11912 AGCGTCTTCACAAAGATTTGCATT 11889 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499637936129560