Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq108 271 8e-68 seq3 84.2 2e-11 >seq108 Length=147947 Score = 271 bits (300), Expect = 8e-68 Identities = 1178/1847 (64%), Gaps = 42/1847 (2%) Strand=Plus/Plus Query 93718 TACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGCAGG 93777 ||||||||||||| || ||||| || |||||||| ||| | || ||| | |||||| | Sbjct 12368 TACGATTACTTTGGTTTTAAAACCCTCGAGAAGTCCTACTTGCTYAAGCTCAATGGCAAG 12427 Query 93778 GTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCACGAC 93837 | | || ||||| || || |||||||||||||| | || |||||||| | || Sbjct 12428 ATCGCAGAACGACCACAGTGCATGTTGATGCGCGTCGCCGTTGGAATTCACGGAGATGAT 12487 Query 93838 ATGCCGAATGTTTTGCGGGCTTTCAGAGACATG-CGGGACAAGAGGTATACCATGGCCAC 93896 || | || ||| | | | | || | | ||| || | | | ||||| |||| Sbjct 12488 ATCGAGCGGGTCTTGGAGACCTATAAAGGCCTCTCGGAACGATACTTCACCCATG-CCAC 12546 Query 93897 CCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGATGAC 93956 |||||||| |||||||| || ||| || |||||||| || ||||| ||| |||| Sbjct 12547 ACCGACCCTCTTCAACGCCGGAACCAACAACCCTCAGATGTCCTCTTGTTTTCTGTTGAC 12606 Query 93957 GAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCATCTC 94016 | |||| ||||||||| || || | ||||| |||||| ||| || || || Sbjct 12607 AATGAAGGAAGACTCCATCGATGGCATCTACGACACACTCAAGAGCTGCGCCGTGATTTC 12666 Query 94017 AAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTACAT 94076 || ||||| || ||||| || | |||| || | |||||||| |||||||| Sbjct 12667 GAAGTACGCAGGTGGAATTGGTCTGGCAACCCACAACATTCGTGCCAGTAAATCCTACAT 12726 Query 94077 CCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAACGC 94136 || || ||||| || || ||||| ||| ||||||| ||| | || |||||||||||| | Sbjct 12727 TCGTGGAACCAACGGTACATCCAATGGCATCGTCCCCATGTTGCGTGTCTTCAACAACAC 12786 Query 94137 GGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTCGA 94196 || | ||||| || |||||||| || | | | ||||| | || | || | || Sbjct 12787 CGCCMGATACGTCGATCAGGGTGGAGGCAAGCGCAAGGGAAGCATTGCCATTTACTTGGA 12846 Query 94197 GCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGATCT 94256 |||||||||||| || | || || | || || || || |||||||| ||||| Sbjct 12847 GCCCTGGCACGCAGATATCTTTGCCTTTTTAGATCTTCGCAAAAACCACGGGAACGAAGC 12906 Query 94257 GGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACGCGT 94316 || | || | || | || ||| |||||||| | || ||||| || ||| |||| || Sbjct 12907 CGATCGCGCACGTGATTTGTTTTACTCTCTCTGGATCCCTGACCTGTTCATGGAACGTGT 12966 Query 94317 CGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCCGACGT 94376 | || ||| | |||| | | |||||| | || || ||||| || |||| Sbjct 12967 CAAGGCCAACGGGACATGGACGTTGATGTGTCCCGACGAGTGCCCCGGTCTCCCCGA--- 13023 Query 94377 TTG---TGGATCGCGTTTTGAA-GACTTGTATGCTCGTTACGAATCGCAGGGCAAGGCCA 94432 ||| ||| | | || || || ||||| | ||||| | ||||||| Sbjct 13024 TTGCCACGGA-CARGAGTTCAAGGAATTGTACGAAAAGTACGAGAAAGAAGGCAAGGGTC 13082 Query 94433 GGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGACGG 94492 | | || | || | |||| ||| ||| ||||| ||||| || || | Sbjct 13083 GCCAAACAATTCAGGCGCAGCAGCTCTGGTTCGCAATCTTGGACTCGCAGGTCGAAACAG 13142 Query 94493 GTACGCCCTACATCTTGTTCAAGGA-CTCTGTCAACGCCAAGTCCAACCAGCAGCACCTC 94551 | || || ||||| ||| |||||| | ||| |||| |||||| || || || || | Sbjct 13143 GAACCCCTTACATGGTGTACAAGGATCACTG-CAACAACAAGTCGAATCAACAAAACTTG 13201 Query 94552 GGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGACGAG 94611 || || | ||||| || || ||||||||||| |||| |||||||| || || Sbjct 13202 GGAACCATTCGTTGTTCGAACCTATGTACCGAGATTGTTCAGTACACTTCTCCAGAGGAA 13261 Query 94612 ATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGAGAT---GCCTAC 94668 | ||| || || ||||| | | ||||| || |||| || || ||| | || || Sbjct 13262 ACTGCCGTTTGCAACCTTGCCAGCATCAGTCTCTCCAAGTTGGTACGACCTCTCACCAAC 13321 Query 94669 A--CGTCTACTGCTTCGTTCGATCTGGAGGAGCTTGTGAACTTCGCGGGAAGGATGGTCT 94726 | | | ||| || ||||| | || ||||| | | ||| | || | Sbjct 13322 AATGGCCCACTCATT--TTCGACTTCGAAAAGCTTCGACAGGTTGCGATGATTTTGACCA 13379 Query 94727 TGAACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACTCAA 94786 |||||||| || || |||||| || |||||||| | || || || | |||| | Sbjct 13380 GAAACCTGAATAGAGTCATCGACCGCAATTTCTACCCTATTCCCGAAGCCAAATACTCGA 13439 Query 94787 ACCTGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGATGA 94846 || ||||||| || || || || | || || ||||| || || || || | | ||| Sbjct 13440 ACATGAAGCACCGTCCAATTGGTCTTGGTGTTCAGGGATTGGCAGATGCTTTTGCCATGC 13499 Query 94847 TGCGTCTGCCCTACGACTCTGTCGACGCGGCGGGTTTGAATTTGAACATATTCGAAAGCA 94906 | || |||| ||||||| ||| || || || || |||| || || | || Sbjct 13500 TCAAGCTCCCCTTCGACTCTCCCGAGGCAGCTCAATTAAACCGCGACATTTTTGAGACCA 13559 Query 94907 TTTATTACGGGGCCATGAA--ACAATCCGTCCACTTGGCCAGATCGGACGGCGGGCCAC- 94963 |||| | ||| ||| || | | | | | | | || | | || | ||| ||| Sbjct 13560 TTTACTTCGGTGCC-TGTACTGCGAGTTG-CGATCTTGCGAAA----ACTGAGGGACACT 13613 Query 94964 ACGAATCGTTCCGCGGATCGCCCTTGGAACAGGGCATTTTTCAGTTCGACCTCTGGGGTG 95023 |||| | | ||| || ||| || ||||| | | || || ||| | ||||| | Sbjct 13614 ACGAGAGTTATCCCGGGTCTCCCGTGAGCCAGGGAAAACTACAATTTGACTTGTGGGGCG 13673 Query 95024 TGAAGCCCTCGGGTCTGTACGACTGGG-AAGCTCTACGCGCTGATGTTATCAAACACGGT 95082 | | ||| | || | |||||| | | | | || || || | | ||||| Sbjct 13674 TYACACCCAGCGATCGTTGGRACTGGGCCAAATTGAAG-GCAGAGATTGCCGAGCACGGA 13732 Query 95083 GTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGC 95142 ||| ||| | ||| | || || || |||||||| || ||||| || ||||| | || Sbjct 13733 ATGAGGAACTCCCTGTTGGTAGCTCCAATGCCCACCGCATCCACCGCCCAGATATTGGGT 13792 Query 95143 AACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGG 95202 |||||||| ||| || || |||||||| | |||||| | || || | || || Sbjct 13793 AACAACGAAAGTACCGAGCCATTTACCTCCAATATCTACAACCGACGTGTTTTGGCAGGA 13852 Query 95203 GAATTCCCCGTCATCAACAAGCACCTCCTACGGGACCTGACGTCTCTGGGTGTGTGGGGT 95262 || || | | ||||||||||| | | || || ||||| || || ||| | ||| Sbjct 13853 GAGTTTACGATTGTCAACAAGCACTTGTTGCGCGATCTGACCTCGCTTGGTATTTGGAAC 13912 Query 95263 GACAAGGTCAAGAACCAACTG-CTACGCGCCAAC---GGCTCCGTCCAGAACATCCCGCA 95318 || |||| |||| | || ||| || || || || ||||| ||| | Sbjct 13913 GA----GTCACTCCGCAACCGCCTCATCGCTGACCGTGGATCGGTGCAGAAGATCGAAGA 13968 Query 95319 AATACCGGAGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAGCGCGTGAT 95378 ||| || || | || | | |||||||| || |||||| | || || || | || Sbjct 13969 AATTCCCAAGAAACTCCGAGATGTGTACAAGACTGTCTGGGAGGTTCCACAACGAATCAT 14028 Query 95379 ACTCGACCACGCGGCCGCCCGCGGGCCCTTCATCTGCCAGAGNNNNNNNNNNNNNNNNNN 95438 |||||| || |||| || ||||| ||||||||||| Sbjct 14029 TCTCGACTTGGCTGCCGATCGTTCCCCCTTTATCTGCCAGAGCCAGAGTCTGAATGTTCA 14088 Query 95439 NATGGCCGAGCCCAGTCGCGGAAAAA--TAACGTCCATGTTGTTCTACGGGTGGAGAAAG 95496 || ||||| || ||| ||| || | || |||||| ||||| | ||||| ||| Sbjct 14089 CATTGCCGATCC--TTCGTCGAAGAAGTTGACCTCCATGCATTTCTATGCGTGGAAGAAG 14146 Query 95497 GGTCTCAAGACCGGTATGTATTATTTGCGAACCAGGCCAAAGGCGGA 95543 || || |||||||| ||||| || | ||| | | || ||||| || Sbjct 14147 GGACTGAAGACCGGAATGTACTACCTACGATCTCGACCCAAGGCCGA 14193 >seq3 Length=497493 Score = 84.2 bits (92), Expect = 2e-11 Identities = 235/358 (66%), Gaps = 2/358 (1%) Strand=Plus/Plus Query 94011 CATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTC 94070 ||| || |||| || || ||||| || | || || ||| | | || || ||||| || Sbjct 139217 CATATCCAAATCTGCTGGTGGAATTGGATTGAGCGTGCACAATATTCGAGCTAGGGGGTC 139276 Query 94071 CTACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAA 94130 |||| ||||| || || ||||| || || || |||||||| || || | | | Sbjct 139277 TCCCATCAAGGGTACACGAGGTACTTCCAATGGACTGGTTCCTATGCTTCGCGTTTACGA 139336 Query 94131 CAACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTA 94190 | ||| | ||||| || || || ||||| | | || ||| | || || || || Sbjct 139337 TGTGACAGCGAGATACGTTGATCAAGGAGGTGGAAAGCGGCCTGGTGCATTTGCTGTTTA 139396 Query 94191 TCTCGAGCCCTGGCACGCGGACGTGCAGG-CTTTCATCGACCTGCGAAAGAACCACGGCA 94249 | || |||||||| ||||| | | | ||| | | ||| |||||||||||| | Sbjct 139397 CATTGAACCCTGGCATTCGGACATTTTCGACGTTCTTA-ATCTGAAAAAGAACCACGGGA 139455 Query 94250 ACGATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGA 94309 | || || | || |||| || || |||| || ||| | || || | ||||||| Sbjct 139456 AAGAAGAACAGCGAGCTCGAGATCTATTTTACGGCCTATGGATCCCTGATTTGTTTATGA 139515 Query 94310 AACGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACT 94367 |||| || ||||| | ||||||||| | |||||| || |||| || || || Sbjct 139516 AACGAGTAGAGAACGATGAAAACTGGAGTCTGATGTGTCCCGATCAATGCCCTGGCCT 139573 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494716403740040