Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq110 159 3e-34 seq456 127 2e-24 seq386 96.9 3e-15 seq3 82.4 8e-11 >seq110 Length=137954 Score = 159 bits (176), Expect = 3e-34 Identities = 343/512 (67%), Gaps = 3/512 (1%) Strand=Plus/Plus Query 52326 GTGCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACACCGCC 52385 || || ||||| || |||||||| | ||||| | ||||| ||| | | ||| Sbjct 11249 GTCCCCTGCGTGCGGAAAAAGGCCCGCTGGGCCCTCCAGTGGTGCGACTCGGGAATGGCC 11308 Query 52386 ACGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGC 52445 | | || ||||| || ||||| | | || ||||| | ||||| || || ||| Sbjct 11309 AGCTTTGCGGAGCGGTGCGTCGCCTTTTGCGTCGTGGAGGGAATCTTTTTCTCGGGGAGC 11368 Query 52446 TTTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAAC 52505 || ||||||||||| | || | | ||| | |||||||||||| | || |||| Sbjct 11369 TTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGCCTGGCCTTTTCCAAC 11428 Query 52506 GAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTCTACTACAAGACG 52565 ||| | || ||||||||||| ||||| ||| |||||||| ||| | |||||| | | Sbjct 11429 GAGCTCATCTCGCGCGACGAGGGACTCCACTGCGACTTTGCCTGCATGCTCTACAACAAG 11488 Query 52566 CGCGTGACCGAAAAATTGGATTCGGACACGATCCTGAGCATGTTCAAGGAGGCGGTGGCT 52625 | || | | || | | | || ||| || || ||| | || || | Sbjct 11489 CTGGTCAAC---AAGCTCGCCCCCGAGCGCATCGTGGAGATTGTCACCAACGCCGTCGAC 11545 Query 52626 ATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAG 52685 ||||||||||| || | | | ||| || ||||| ||||| | ||||||||| || || Sbjct 11546 ATCGAAAAGGAATTCGTCAGCGACGCCCTCCCGGTAGAGCTCATCGGCATGAACTCGAAG 11605 Query 52686 TCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGGCAGCCA 52745 |||| ||||||||||||| || || || ||| |||| || || ||| Sbjct 11606 CTCATGCAGCAGTACATCGAGTTCTGCGCCGACCGCCTGCTGGTCGCCCTGGGTGCCCCA 11665 Query 52746 AAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAG 52805 ||| ||| | | | | ||| || ||||||| ||| | | || ||||| |||| ||| Sbjct 11666 AAGCACTACCAGACCCCCAACCCCTTTGAGTGGATGGAGATGATCTCGCTGCAGGGAAAG 11725 Query 52806 ACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 |||||||||||||||||||| ||||| || || Sbjct 11726 ACCAACTTTTTCGAGAAGCGCGTCGGGGAATA 11757 >seq456 Length=31050 Score = 127 bits (140), Expect = 2e-24 Identities = 166/226 (73%), Gaps = 4/226 (2%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || ||||| || | || || || | | | || ||||| || ||||||||||||||| Sbjct 6859 CCTCCCCGCAAGCGAAGCACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGCTC 6800 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||||| | ||| || |||| | |||| |||||||| ||||| ||||| Sbjct 6799 AGGGTGCGGCCATCCTCCAATTGCTTTCCGGCAAAGATGAGACGCTGCTGGTCGGGAGGA 6740 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565 || ||||| ||||| ||| || ||||| | |||| | | |||||||| || |||| Sbjct 6739 ATTCCTTCCTTGTCCTGGATCTTG-GTTTTGACGTTGT-CGATGGTGTCGGACGGTTCCA 6682 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTG 138611 | || | || | || || |||||||| || |||||||||||||| Sbjct 6681 CGTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTTACAAAAATCTG 6636 >seq386 Length=39556 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | ||| || || | | | || |||||||| ||||||||||| ||| Sbjct 12116 CCTCCGCGAAGACGGAGAACCAAGTGAAGGGTAGATTCCTTTTGGATGTTGTAGTCACTC 12057 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||| || ||||| || || | | |||| |||||||| || || ||||| Sbjct 12056 AAGGTGCGGCCGTCTTCCAGTTGCTTTCCAGCAAAGATAAGACGCTGCTGATCAGGAGGA 11997 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565 || ||||| ||||| || | || || || | ||| || | ||| || | | |||| Sbjct 11996 ATTCCTTCCTTGTC-CTGGATCTTGGTCTTCACGTTG-TCAATGGTATCAGATGGTTCCA 11939 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 | || | || | || |||||||| || || || ||||| || ||||| Sbjct 11938 CATCCAGTGTAATAGTCTTACCAGTGAGCGTCTTCACAAAGATTTGCAT 11890 >seq3 Length=497493 Score = 82.4 bits (90), Expect = 8e-11 Identities = 183/272 (67%), Gaps = 5/272 (2%) Strand=Plus/Minus Query 153822 TCGTATCGCTCGTACAGTCGCTCAAACTCGTCGCCGTAGCAGTCGGCGAGGCCGGGACAC 153881 |||||| || || ||| |||||| || | ||| ||| || | |||||| || || Sbjct 139621 TCGTATTTTTCATATAGTTCCTCAAAYTCTTTTCCGCTGCACTCTGGGAGGCCAGGGCAT 139562 Query 153882 TGATGCGGACACATCAGCGACCACATATCGTCGGCGTTGACGCGTCGCATGAACAGATCC 153941 |||| ||||||||||| ||| | || ||| | || ||| ||| |||| ||| Sbjct 139561 TGATCGGGACACATCAGACTCCAGTTTTCATCGTTCTCTACTCGTTTCATAAACAAATCA 139502 Query 153942 GGCACCCAGAGCGCGTACATGAGGTCGCGCGCCTTGCAATCCTCCGCGCCCAT-GTTGCG 154000 || | ||| || |||| | || || || | || || | || | ||| | ||| Sbjct 139501 GGGATCCATAGGCCGTAAAATAGATCTCGAG-CTCGCTGTTCTTCTTTCCCGTGGTTCTT 139443 Query 154001 TTTCAGATTGAGCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGGC 154060 ||||||||| || ||| | ||||| | ||||||||||||||||| || || | || Sbjct 139442 TTTCAGATTAAGAACGTCGAAAATGTCCGAATGCCAGGGTTCAATGTAAACAGCAAATGC 139383 Query 154061 ACCTTTACGCTTT---CCGCCCTGATCGACGT 154089 ||| |||||| || || ||||| |||| Sbjct 139382 ACCAGGCCGCTTTCCACCTCCTTGATCAACGT 139351 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496255582595280