Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq456 111 1e-19 seq386 105 5e-18 seq141 89.7 4e-13 >seq456 Length=31050 Score = 111 bits (122), Expect = 1e-19 Identities = 159/224 (71%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || || ||||| | | || || |||||||| || || || || |||||||| ||||| Sbjct 6859 CCTCCCCGCAAGCGAAGCACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGCTC 6800 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || | | | || || ||||| || || || | || | |||||| |||||| ||| Sbjct 6799 AGGGTGCGGCCATCCTCCAATTGCTTTCCGGCAAAGATGAGACGCTGCTGGTCGGGAGGA 6740 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 |||||||||||||| || ||| |||| || | || || || ||| ||| ||| Sbjct 6739 ATTCCTTCCTTGTCCTGGATCTTGGTTTTGACGTTGTCGATGGTGTCGGACGGTTCCACG 6680 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTG 15173 || | ||| ||||| || || ||||| || ||||||||||| || Sbjct 6679 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTTACAAAAATCTG 6636 >seq386 Length=39556 Score = 105 bits (116), Expect = 5e-18 Identities = 147/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 ||||| ||||| ||||| || ||||| || ||||| ||||| || | || | ||||| Sbjct 11414 ACTAAGTGAAGAGTAGATTCCTTTTGGATATTGTAGTCGCTTAGGGTCCTTCCATCTTCC 11355 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 ||||| || ||||| | ||||| | ||| || || ||||||||||||||||| Sbjct 11354 AATTGCTTTCCAGCAAAAATCAATCTCTGCTGATCCGGAGGAATTCCTTCCTTGTCCTGG 11295 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || ||| | || ||| | || || || || | || || || || || || || || Sbjct 11294 ATCTTGGTCTTGACATTGTCAATGGTGTCCGAAGGCTCGACATCCAACGTGATTGTCTTG 11235 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTG 15173 || |||| ||||||||| ||||| || Sbjct 11234 CCGGTCAAAGTTTTTACGAAAATCTG 11209 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| || ||||||||||| || ||||| |||||||| || || | | | ||||||| Sbjct 12099 AACCAAGTGAAGGGTAGATTCCTTTTGGATGTTGTAGTCACTCAAGGTGCGGCCGTCTTC 12040 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 | ||| || ||||| | || | |||||| || || ||||||||||||||||| Sbjct 12039 CAGTTGCTTTCCAGCAAAGATAAGACGCTGCTGATCAGGAGGAATTCCTTCCTTGTCCTG 11980 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 || ||| | || || | || || ||||| ||| || || | ||||| || || Sbjct 11979 GATCTTGGTCTTCACGTTGTCAATGGTATCAGATGGTTCCACATCCAGTGTAATAGTCTT 11920 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 ||| || || || || ||||| |||||||| Sbjct 11919 ACCAGTGAGCGTCTTCACAAAGATTTGCAT 11890 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || || ||||| || || || ||||| |||||||| || || | | | ||||||| Sbjct 11870 ACCAAGTGAAGCGTGGATTCCTTTTGGATGTTGTAGTCACTCAAGGTGCGGCCGTCTTCC 11811 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | ||| || ||||| | ||||| | ||| || || ||| |||||||||||||| Sbjct 11810 AGTTGCTTTCCAGCAAAAATCAATCTCTGCTGATCAGGTGGGATTCCTTCCTTGTCCTGG 11751 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || ||| | || || | || || ||||| ||| ||||| | || ||||| ||| Sbjct 11750 ATCTTGGTCTTCACGTTATCAATGGTATCAGACGGTTCAACGTCCAGTGTGATGGTCTTA 11691 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || || || || ||||| |||||||| Sbjct 11690 CCAGTGAGTGTCTTCACAAAGATTTGCAT 11662 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 || || || || || || || || ||||| ||||| || | || | ||||| ||||| Sbjct 11636 TGCAGAGTGGACTCCTTCTGAATATTGTAGTCGCTTAGGGTCCTTCCATCTTCCAATTGC 11577 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 || ||||| | ||||| | ||| || || ||| |||||||||||||| ||| ||| Sbjct 11576 TTTCCAGCAAAAATCAATCTCTGCTGATCAGGTGGGATTCCTTCCTTGTCCTGAATCTTG 11517 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 | || ||| | || ||||| || | || || || || || || || || || || Sbjct 11516 GTCTTGACATTGTCAATAGTGTCCGAAGGCTCGACATCCAACGTGATAGTCTTTCCCGTG 11457 Query 15154 AGAGTTTTTACAAAAATTTGCAT 15176 || || || ||||| |||||||| Sbjct 11456 AGGGTCTTGACAAAGATTTGCAT 11434 >seq141 Length=126064 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || |||| ||||| | || ||||| ||||| || || ||||| ||||||||||| || Sbjct 117154 CCTCCTCTCAATCGCAGGACCAAATGCAGGGTGGATTCCTTTTGGATGTTGTAATCACTC 117095 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| ||| | || || ||||| || || || | || | ||| || || || ||| Sbjct 117094 AGAGTTCGACCATCCTCCAATTGCTTTCCGGCAAAGATAAGACGTTGCTGATCCGGTGGG 117035 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTAT-TTTCTAC 15128 |||||||||||||| || ||| | || || | || || || || | || || || Sbjct 117034 ATTCCTTCCTTGTCCTGGATCTTGGTCTTGACGTTGTCGATCGTGTC-CGATGGCTCGAC 116976 Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || | || ||||| || || || || || || || || |||||||| Sbjct 116975 ATCGAGAGTGATGGTCTTTCCGGTGAGGGTCTTGACGAAGATTTGCAT 116928 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357387213069215