Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq110 140 3e-28 seq456 105 6e-18 seq386 86.0 6e-12 seq57 84.2 2e-11 >seq110 Length=137954 Score = 140 bits (154), Expect = 3e-28 Identities = 292/427 (68%), Gaps = 15/427 (4%) Strand=Plus/Plus Query 47158 TCGTCGAGGGCGTCTTCTTCTCGGGCAGCTT-TGCGGCGATATTTTACATGAAAACCAAA 47216 |||| ||||| |||| |||||||| ||||| |||| | || |||| | || | Sbjct 11340 TCGTGGAGGGAATCTTTTTCTCGGGGAGCTTCTGCGCC-ATCTTTTGGCTCAAGAAGCGC 11398 Query 47217 GGAGTTATGCCCGGCCTCACGTTTAGCAACGAGCTAATCTCGAGAGACGAAGGCCTGCAC 47276 || | ||||||||||| | ||| ||||||||| |||||| | ||||| || || ||| Sbjct 11399 GGCCTCATGCCCGGCCTGGCCTTTTCCAACGAGCTCATCTCGCGCGACGAGGGACTCCAC 11458 Query 47277 ACCAACTTTGCCTGTCTCTACTACAACACTAGAGTCGATCAA-AAGTTGGAC---GTGCC 47332 | |||||||||| | |||||||| || | |||| ||| | | | | || Sbjct 11459 TGCGACTTTGCCTGCATGCTCTACAACA----AGCTGGTCAACAAGCTCGCCCCCGAGCG 11514 Query 47333 CACCGTCAGCGACATGTTTGCCGAAGCCGTCGCCATTGAGATGGAGTTTTTCGCCGAGGC 47392 || ||| || || | || | ||||||| ||| || | ||| || || ||| || Sbjct 11515 CATCGTG---GAGATTGTCACCAACGCCGTCGACATCGAAAAGGAATTCGTCAGCGACGC 11571 Query 47393 TCTGCCCGAATCTTTAGTGGGAATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGT 47452 || || | | | | || |||||| || || | ||| |||||||||| || Sbjct 11572 CCTCCCGGTAGAGCTCATCGGCATGAACTCGAAGCTCATGCAGCAGTACATCGAGTTCTG 11631 Query 47453 CGCCGACCGCCTGCTCGTTCAGCTAAAGTATCCCAA-GATTTACCACACCGAGAATCCAT 47511 ||||||||||||||| || || || ||||| | ||||| ||| || || | Sbjct 11632 CGCCGACCGCCTGCTGGTCGCCCTGG-GTGCCCCAAAGCACTACCAGACCCCCAACCCCT 11690 Query 47512 TCGAGTTTATGAACAACATTTCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCG 47571 | |||| ||| | | || ||||| |||| |||||||||||||||||||||||||||| Sbjct 11691 TTGAGTGGATGGAGATGATCTCGCTGCAGGGAAAGACCAACTTTTTCGAGAAGCGCGTCG 11750 Query 47572 GCGAATA 47578 | ||||| Sbjct 11751 GGGAATA 11757 >seq456 Length=31050 Score = 105 bits (116), Expect = 6e-18 Identities = 160/225 (71%), Gaps = 2/225 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || || || || || | |||||| || | || || || || || || ||||| |||| | Sbjct 6859 CCTCCCCGCAAGCGAAGCACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGCTC 6800 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || | || ||||| || |||| | |||||||| |||||||| Sbjct 6799 AGGGTGCGGCCATCCTCCAATTGCTTTCCGGCAAAGATGAGACGCTGCTGGTCGGGAGGA 6740 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || || ||||||||| ||| || |||| ||||| ||| |||||| | || || Sbjct 6739 ATTCCTTCCTTGTCCTGGATCTTGGTTTTGACGTTGT-CGATGGTGTCGGACGGTTCCAC 6681 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTG 127110 || | ||| | || ||||| ||||| || |||||||||||||| Sbjct 6680 GTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTTACAAAAATCTG 6636 >seq386 Length=39556 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || ||||||||||| |||| | || | ||| || | || |||||| Sbjct 11630 GTGGACTCCTTCTGAATATTGTAGTCGCTTAGGGTCCTTCCATCTTCCAATTGCTTTCCA 11571 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || | ||||||| ||||||||| || || || || ||||||||| || || |||| Sbjct 11570 GCAAAAATCAATCTCTGCTGATCAGGTGGGATTCCTTCCTTGTCCTGAATCTTGGTCTTG 11511 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | || | ||||||| | |||||| || | || | || || || || || || Sbjct 11510 ACATTGTCAATAGTGTCCGAAGGCTCGACATCCAACGTGATAGTCTTTCCCGTGAGGGTC 11451 Query 127097 TTTACAAAAATCTGCAT 127113 || ||||| || ||||| Sbjct 11450 TTGACAAAGATTTGCAT 11434 >seq57 Length=189777 Score = 84.2 bits (92), Expect = 2e-11 Identities = 101/135 (75%), Gaps = 2/135 (1%) Strand=Plus/Minus Query 126981 AGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTT 127040 ||||||||| |||||| ||||| || || |||||||| || | |||||| ||| | || Sbjct 74095 AGATCAATCTCTGCTGCTCGGGTGGGATTCCCTCCTTCTCTGCAATTTTCGCCTTAACTT 74036 Query 127041 GTTCGACGGTGTC-CGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTT 127099 ||||| || || | | | ||||||||||| | || ||||| || |||| || || Sbjct 74035 CTTCGATGGATTCTCCTTC-CTCGACTTCGATCGCAACTGTTTTTCCCGTCAAGGTCTTC 73977 Query 127100 ACAAAAATCTGCATG 127114 ||||||| |||||| Sbjct 73976 ACAAAAAGTTGCATG 73962 Score = 82.4 bits (90), Expect = 7e-11 Identities = 100/134 (75%), Gaps = 2/134 (1%) Strand=Plus/Minus Query 126981 AGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTT 127040 ||||||||| |||||| ||||| || || |||||||| || | |||||| ||| | || Sbjct 74323 AGATCAATCTCTGCTGCTCGGGTGGGATTCCCTCCTTCTCTGCAATTTTCGCCTTAACTT 74264 Query 127041 GTTCGACGGTGTC-CGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTT 127099 ||||| || || | | | ||||||||||| | || ||||| || |||| || || Sbjct 74263 CTTCGATGGATTCTCCTTC-CTCGACTTCGATCGCAACTGTTTTTCCCGTCAAGGTCTTC 74205 Query 127100 ACAAAAATCTGCAT 127113 ||||||| ||||| Sbjct 74204 ACAAAAAGTTGCAT 74191 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475494267807760