Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq386 134 1e-26 seq141 114 1e-20 seq3 102 7e-17 seq456 98.7 9e-16 >seq386 Length=39556 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 |||||||| || || | | ||||| || || || ||||||||||||||||| || ||| Sbjct 11435 ATTCCTCCACGAAGACGAAGCACTAAGTGAAGAGTAGATTCCTTTTGGATATTGTAGTCG 11376 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || | ||| | ||| |||||||| ||||| || | ||||||| ||||| ||||| Sbjct 11375 CTTAGGGTCCTTCCATCTTCCAATTGCTTTCCAGCAAAAATCAATCTCTGCTGATCCGGA 11316 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||| ||||| || || || || || |||| || | |||||| |||| |||| Sbjct 11315 GGAATTCCTTCCTTGTCCTGGATCTTGGTCTTGACATTGTCAATGGTGTCCGAAGGCTCG 11256 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTG 45337 || || | || | || |||||||| | ||||||||| ||||| || Sbjct 11255 ACATCCAACGTGATTGTCTTGCCGGTCAAAGTTTTTACGAAAATCTG 11209 >seq141 Length=126064 Score = 114 bits (126), Expect = 1e-20 Identities = 150/205 (73%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 45137 ATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTG 45196 |||||| || |||||||||||||| || ||||| || | ||| | ||| |||||||| Sbjct 117131 ATGCAGGGTGGATTCCTTTTGGATGTTGTAATCACTCAGAGTTCGACCATCCTCCAATTG 117072 Query 45197 TTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTT 45256 ||||| || | || | |||||||| ||||| || || ||||| || || || || || Sbjct 117071 CTTTCCGGCAAAGATAAGACGTTGCTGATCCGGTGGGATTCCTTCCTTGTCCTGGATCTT 117012 Query 45257 TTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGG 45315 |||| || | || | ||||| || | |||||| |||||||| | || || |||| Sbjct 117011 GGTCTTGA-CGTTGTCGATCGTGTCCGATGGCTCGACATCGAGAGTGATGGTCTTTCCGG 116953 Query 45316 TTAGAGTTTTTACAAAAATTTGCAT 45340 | || || || || || |||||||| Sbjct 116952 TGAGGGTCTTGACGAAGATTTGCAT 116928 >seq3 Length=497493 Score = 102 bits (112), Expect = 7e-17 Identities = 233/347 (67%), Gaps = 6/347 (2%) Strand=Plus/Plus Query 123372 GAAGAAAAGAAAGCCCGCGATTTGTTGTACGCTTTATGGGTACCCGATTTGTTTATGCGA 123431 |||||| || ||| || ||| | || |||| ||||| | || |||||||||||| | Sbjct 139458 GAAGAACAGCGAGCTCGAGATCTATTTTACGGCCTATGGATCCCTGATTTGTTTATGAAA 139517 Query 123432 CGCGTAAAAGACGACGGCGTGTGGTCGCTCATGTGTCCCGATCGGTGTCCCGGCTTGAGC 123491 || ||| | |||| | ||| || ||||||||||||| || || ||| | Sbjct 139518 CGAGTAGAGAACGATGAAAACTGGAGTCTGATGTGTCCCGATCAATGCCCTGGCCTCCCA 139577 Query 123492 GACGTTTA-CGGCAATCAGTTTGACGAGTTGTACGCGCAATACGAGCGCGAAGGCAAACA 123550 || || | ||| || | ||||| || | || | ||||||| ||||| ||| | Sbjct 139578 GA-GTGCAGCGGAAAAGARTTTGAGGAACTATATGAAAAATACGAAAAAGAAGGAAAATA 139636 Query 123551 GGTTAGTCAGGTTCCGGCACGTGA--TTTGTTCAAATTTATTATCGAAACACAAGTCGAA 123608 ||| | ||| | || || || || | || || ||| | ||| | ||| ||||| Sbjct 139637 TGTTCGCCAGATGCCTGCCCGAGAGGTATGGTC--CGCAATTCTGGAATCCCAAATCGAA 139694 Query 123609 ACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAATCAGAGCAAC 123668 || ||||| || |||||||| || || || ||| || |||| || || | || Sbjct 139695 ACAGGAACTCCTTACATGCTATATAAGGATGCCGCTAATGAAAAAAGTAACCAAAAGAAT 139754 Query 123669 TTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATA 123715 | |||||||| |||| |||||||| ||| | ||||||||| |||| Sbjct 139755 ATTGGAACAATTCAATGCAGTAATCTATGCACAGAAATTATCCAATA 139801 >seq456 Length=31050 Score = 98.7 bits (108), Expect = 9e-16 Identities = 144/201 (72%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || |||||||| ||||| || || ||||| | ||| ||| |||||||| Sbjct 6835 TGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCCAATTGC 6776 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 ||||| || | || | || |||||||| || ||||| ||||| || || || || || Sbjct 6775 TTTCCGGCAAAGATGAGACGCTGCTGGTCGGGAGGAATTCCTTCCTTGTCCTGGATCTTG 6716 Query 45258 TGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316 ||||| || | || | ||||||||| | || || || || || | || ||||| || Sbjct 6715 GTTTTGA-CGTTGTCGATGGTGTCGGACGGTTCCACGTCCAGGGTGATGGTCTTGCCAGT 6657 Query 45317 TAGAGTTTTTACAAAAATTTG 45337 || || ||||||||||| || Sbjct 6656 CAGGGTCTTTACAAAAATCTG 6636 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451996990606040