Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_013085.1 Length=194454 Score E Sequences producing significant alignments: (Bits) Value seq217 668 0.0 >seq217 Length=78499 Score = 668 bits (740), Expect = 0.0 Identities = 752/1007 (75%), Gaps = 0/1007 (0%) Strand=Plus/Minus Query 7527 TCTCAGCAGCAGCAAGGTCAAGAGGGAAGTTGTGAGCATTACGCTCGTGCATGACTTCCA 7586 |||| ||| ||| | |||||||| ||||| ||||||||||| ||||||||||| |||| Sbjct 41574 TCTCGCCAGAAGCCAAATCAAGAGGAAAGTTATGAGCATTACGTTCGTGCATGACCTCCA 41515 Query 7587 TGCCAAGACCAGCACGGTTGAGCACGTCTGCCCAGGTGTTCAGGACACGACCTTGACCAT 7646 | |||||| | |||||||||| | ||| ||||||||||| | |||||| || | | Sbjct 41514 TTCCAAGATCGGCACGGTTGATTATGTCGGCCCAGGTGTTGATGACACGTCCCTCGGAGT 41455 Query 7647 CAATGATGGACTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATGGTGCTAACACCAA 7706 | |||| | ||||||||||||||| |||||||||||||| ||||||||| ||||| | Sbjct 41454 CGATGACAGCCTGGTTGAAGTTGAATCCGTTGAGGTTGAAGGCCATGGTGGAGACACCCA 41395 Query 7707 GAGCAGTGAACCAGATGCCAACAACTGGCCATGCTGCGAGGAAGAAGTGCAGCGAACGGG 7766 || ||| ||||||| || | || ||||| || | ||||||||| || | ||| | Sbjct 41394 TGGCGGTGCACCAGATACCCAATACAGGCCAGAGAGCTAAGAAGAAGTGAAGAGCACGCG 41335 Query 7767 AGTTGTTGAACGAAGCGTATTGGAAGATCAGACGACCAAAGTATCCGTGAGCAGCAACGA 7826 ||||||||||||| |||||||||||||| ||||| |||||||| |||||||| || || | Sbjct 41334 AGTTGTTGAACGACGCGTATTGGAAGATGAGACGTCCAAAGTACCCGTGAGCGGCGACAA 41275 Query 7827 TGTTGTAGGTCTCTTCTTCTTGACCGAACTTATAACCATAGTTCTGGGACTCAGACTCAG 7886 |||||||||| || ||||| || || ||||| || || | || ||| || || | Sbjct 41274 TGTTGTAGGTTTCCTCTTCCTGGCCAAACTTGTATCCGTTATTGGTGGATTCGTTTTCGG 41215 Query 7887 TGGTTTCACGAACCAGAGAAGAGGTTACAAGCGAACCATGCATCGCACTGAACAGAGAAC 7946 |||||||||| | || ||| || || ||||| || || ||||| || ||||| ||| | Sbjct 41214 TGGTTTCACGGATCAAAGAGGAAGTAACAAGAGACCCGTGCATGGCGGAGAACAAAGATC 41155 Query 7947 CACCAAAGACACCAGCGACGCCCAGCATGTGGAAGGGGTGCATCAGGATGTTGTGCTCTG 8006 | || |||||||| || || || ||| || | |||||||| |||||||||||||| | Sbjct 41154 CTCCGAAGACACCTGCAACTCCGGCCATATGAAGCGGGTGCATAAGGATGTTGTGCTCGG 41095 Query 8007 CTTGGAAGACAAGCATGTAGTTGAACGTACCAGAGATGCCAAGAGGCATAGCGTCAGAGA 8066 | |||||||| | |||| ||||||| || || ||| ||||||||||| | || |||| Sbjct 41094 CCTGGAAGACCAACATGAAGTTGAAGGTTCCGCTGATACCAAGAGGCATGCCATCTGAGA 41035 Query 8067 AAGAACCTTGACCGAAAGGATAGACGAGGAATACAGCAGATGCTGCAGCAACTGGAGCAG 8126 || ||||| || | || ||| |||||| ||||| | || || ||||| || || | Sbjct 41034 AACTTCCTTGCCCAATGGGGTAGGTGAGGAAGACAGCGGTGGCGGCTGCAACAGGTGCGG 40975 Query 8127 AGTATGCTACACAGATCCAGGGACGCATACCTAGACGGTAAGAAAGTTCCCACTCACGAC 8186 || |||| ||| | ||||| |||||||| || || || || ||||||||||||||||| | Sbjct 40974 AGAATGCAACAAAAATCCAAGGACGCATTCCGAGGCGATACGAAAGTTCCCACTCACGGC 40915 Query 8187 CCATGTATGCATAGATACCGATCAGGAAGTGGAAGATAACGAGTTGGAAAGGACCACCGT 8246 ||||||| | | | |||| |||||||| | | ||| | |||| | || || |||| Sbjct 40914 CCATGTACGAAGCAACTCCGAGAAGGAAGTGCATCACAACCAATTGGTAGGGTCCTCCGT 40855 Query 8247 TGTAGAGCCACTCATCAAGAGAAGCTGCTTCCCAGATGGGATAGAAGTGGAGACCAATAG 8306 |||| | ||| || || | || || |||||||| | ||| |||||||| | || || | Sbjct 40854 TGTACAACCATTCGTCCATGGAGGCAGCTTCCCAAACGGGGTAGAAGTGCATCCCGATTG 40795 Query 8307 CGTTAGAAGAAGGAACAACAGCACCAGAGATGATGTTGTTGCCATACATGAGCGAACCAG 8366 |||| ||||||| | |||| || | ||||||||| || || || | || || || | Sbjct 40794 CGTTGKAAGAAGGGATGACAGACCCGGTGATGATGTTATTACCGTAAAGAAGAGATCCGG 40735 Query 8367 CGACGGGTTCACGGATGCCGTCAATGTCCACAGGAGGAGCAGCGACGAAAGCGACGATGA 8426 | || ||||| ||||| |||||||||||||||||||| || || | || || |||| Sbjct 40734 CAACAGGTTCGCGGATTCCGTCAATGTCCACAGGAGGTGCGGCAATAAATGCAGTAATGA 40675 Query 8427 AACAAATAGCAGCAGCGAGCAGCGTAGGAATCATCAGGACACCGAACCAACCGACATACA 8486 | || || || || || || || || | ||| | |||||||||||||| || | Sbjct 40674 AGCATGATGCTGCGGCAAGAAGAGTTGGGAACATGATAGTACCGAACCAACCGATGTAAA 40615 Query 8487 GACGATTGTTGGTGGAGGTTACCCAGTTACAGAATTGTTCCCAGGTG 8533 | || |||| |||| || | |||||| |||||| |||||| ||| Sbjct 40614 GGCGGTTGTCGGTGCTTGTGATCCAGTTGGAGAATTTTTCCCACGTG 40568 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622116253560560