Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq108 145 9e-30 seq39 111 2e-19 >seq108 Length=147947 Score = 145 bits (160), Expect = 9e-30 Identities = 569/884 (64%), Gaps = 19/884 (2%) Strand=Plus/Minus Query 116472 AGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTG 116531 |||||||| | ||| || ||||| | || |||| |||||| |||||||| | ||| Sbjct 13249 AGTGTACTGAACAATCTCGGTACATAGGTTCGAACAACGAATGGTTCCCAAGTTTTGTTG 13190 Query 116532 ATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTG 116591 ||| ||||| |||| || ||||||||| | ||| || || || || || || || Sbjct 13189 ATTCGACTTGTTGTTGCAGTGATCCTTGTACACCATGTAAGGGGTTCCTGTTTCGACCTG 13130 Query 116592 GGACTTGAGAATAGCCTTCCATACAT-CGGCGGCTGGCACAGT--GGCGTTGGCTCGCCC 116648 || | | || || ||| | | | ||| ||| | || |||| || ||| Sbjct 13129 CGAGTCCAAGATTGCGAACCAGAGCTGCTGCGCCTGA-ATTGTTTGGCGACC-CTTGCCT 13072 Query 116649 CTCCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGCCTCTGAGAGCCC 116708 || | |||||||||| ||| | ||| ||||| | || || | ||| || Sbjct 13071 -TCTTTCTCGTACTTTTCGTACAATTCCTTGAACTCYTGTCCGTGGCAATCGGGGAGACC 13013 Query 116709 TGGTGCCTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAA 116768 || || || ||||| | | | |||| || ||| || || | |||||| Sbjct 13012 GGGGCACTCGTCGGGACACATCAACGTCCATGTCCCGTTGGCCTTGACACGTTCCATGAA 12953 Query 116769 GAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTG 116828 ||||| ||||||||||| | | || | ||| || |||| | |||| | ||| || Sbjct 12952 CAGGTCAGGGATCCAGAGAGAGTAAAACAAATCACGTGCGCGATCGGCTTCGTTCCCGTG 12893 Query 116829 ATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGC 116888 || || | || |||||| | | |||||| |||||||| || |||| ||| | || Sbjct 12892 GTTTTTGCGAAGATCTAAAAAGGCAAAGATATCTGCGTGCCAGGGCTCCAAGTAAATGGC 12833 Query 116889 GATTGACCCCTTGCGA---CGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATAC 116945 || |||||||| | ||| |||| | || || | || || ||| || || Sbjct 12832 AATGCTTCCCTTGCGCTTGCCTCCACCCTGATCGACGTATCKGGCGGTGTTGTTGAAGAC 12773 Query 116946 GCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTGTT 117005 || | ||| || | ||| |||| ||| || || || || ||||| || || | Sbjct 12772 ACGCAACATGGGGACGATGCCATTGGATGTACCGTTGGTTCCACGAATGTAGGATTTACT 12713 Query 117006 GGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCA 117065 ||| | | | |||| | || |||||| || ||||| |||| || || ||||| Sbjct 12712 GGCACGAATGTTGTGGGTTGCCAGACCAATTCCACCTGCGTACTTCGAAATCACGGCGCA 12653 Query 117066 CTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCA 117125 | |||| || ||||||| |||||||| ||||| |||| ||| | || || || Sbjct 12652 GCTCTTGAGTGTGTCGTAGATGCCATCGATGGAGTCTTCCTTCATTGTCAACAGAAAACA 12593 Query 117126 GCTCGACATTTGTGGCCTTGGTG-TACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGA 117184 ||||| || || ||| || | || |||||||||||||| ||||| || ||| ||| Sbjct 12592 AGAGGACATCTGAGGG-TTGTTGGTTCCGGCGTTGAAGAGGGTCGGTGTGGCATGGGTGA 12534 Query 117185 A----CATACCTTGGGACATCTTATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCG 117240 | | | || | | | | ||| |||||||||||||| || || || ||| Sbjct 12533 AGTATCGTTCCGAGAGGCCT-TTA---TAGGTCTCCAAGACCCGCTCGATATCATCTCCG 12478 Query 117241 TGAATACCGATTGAGACCCGCATAAACATGTATTGGGGTGTTTCCATCAGGATACCATCG 117300 ||||| || | | ||| ||||| |||||| | || ||| ||| | | |||| | Sbjct 12477 TGAATTCCAACGGCGACGCGCATCAACATGCACTGTGGTCGTTCTGCGATCTTGCCATTG 12418 Query 117301 AGCCTCTGGAGGTAACTCTTCTCCAAGGTCTTGAGACCAAAATA 117344 ||| | | | ||| |||||| | ||| || | |||||| || Sbjct 12417 AGCTTRAGCAAGTAGGACTTCTCGAGGGTTTTAAAACCAAAGTA 12374 >seq39 Length=234218 Score = 111 bits (122), Expect = 2e-19 Identities = 209/307 (68%), Gaps = 4/307 (1%) Strand=Plus/Plus Query 12681 GGTAGGGACACGGTGATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGG 12740 || ||| |||||||| ||| |||||||| || || || || | ||| || | || | Sbjct 140086 GGAAGGTCCACGGTGACCTTMCGATCAAATCGTCCGGGACGCAAGAGAGCTTGATCCAAA 140145 Query 12741 ATATCAATGCGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCGAAGCCATCC 12800 || || | ||||| || || || || | ||| || | | |||||| |||||| Sbjct 140146 ATGTCGACACGGTTGGTAGCAGCAATAGTGATGATACCGGGATTTCCATCGAATCCATCC 140205 Query 12801 ATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATT--CGCGGGCATACCAC 12858 ||||| ||| | |||||| | ||| |||||||||||||| || ||| |||| || | Sbjct 140206 ATCTCCACCAAAATTTGATTCACGGTCTGTTCACGTTCATCGTTTCCGCCGGCAAAC--C 140263 Query 12859 CCGCACTGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGAT 12918 | || | ||||| || || || || || || || || || | || ||||| | Sbjct 140264 CAGCGCCACGTTGACGTCCAACAGCATCGATCTCATCGATAAAGATAATGCACGGAGCRT 140323 Query 12919 TTTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCT 12978 | | || | |||||||||| || || | |||||| ||||| |||||||||| Sbjct 140324 TCTTCTTTGCTTGTCCAAAGATATCGCGAACACGGGAGGCACCTACACCAACAAACATCT 140383 Query 12979 CCACAAA 12985 ||||||| Sbjct 140384 CCACAAA 140390 Score = 91.5 bits (100), Expect = 2e-13 Identities = 323/498 (65%), Gaps = 26/498 (5%) Strand=Plus/Minus Query 12690 ACGGTGATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATG 12749 || |||| ||| ||||| || ||||| || || || | || | || |||||||| || Sbjct 143389 ACAGTGACCTTTCGATCGAAACGACCAGGTCGAAGCAAAGCTTGATCRAGGATATCGATA 143330 Query 12750 CGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCG---AAGCCATCCATCTCA 12806 || || || || || ||| || || || | |||| || || |||||||||||| Sbjct 143329 CGATTGGTGGCGGCAATGGTAATAATTCCKGG---GTTACCGTCAAAACCATCCATCTCA 143273 Query 12807 GTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATT--CGCGGGCAT-ACCACCCGCA 12863 | || || || || |||||||||||||| ||||| | | | | ||||| || Sbjct 143272 ACAAGGATCTGGTTAATTGTTTGTTCACGTTCGTCATTACCTCCTCCTTGGCCACCTCCA 143213 Query 12864 CTGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCA 12923 ||||| ||||||||| |||||||| || ||||| | || || || || | Sbjct 143212 ---CGTTGGCGACCGACGGCATCAATTTCATCGATGAAGATAATGCAAGGGGCGTTCTTC 143156 Query 12924 CGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACA 12983 ||| | | || ||||| || |||| ||| || ||||| || |||||||| || Sbjct 143155 TTGGCTTGTCCGAAAATATCACGGACTCGAGAGGCTCCAACACCGACGAACATCTCAACG 143096 Query 12984 AAATTGGCGGCGGAA-CATTG-----GATGAAGGGGACGTTGGATTCACCCGCGATGGCT 13037 || | | ||| || || |||||| || || | || || || | || Sbjct 143095 AATT------CAGAACCACTGATGGAGATGAACGGAACACCCGCCTCTCCAGCAACAGCC 143042 Query 13038 CGGGCGAGGAGGGTCTTCCCCGTCCCTGGTTTCCCCGCGAGAAGGGCACCACGTGGGATC 13097 ||||||||||||||| || || || || || | || | ||||||| ||||| Sbjct 143041 TTGGCGAGGAGGGTCTTACCGGTTCCAGGAGGTCCGTCAAGGATAACACCACGGGGGATA 142982 Query 13098 CTGGCACCACTTC-CAAAGTAGCGCTCGGGTTGTTTAAGAAAGTCCACGATTTCTTCCAA 13156 | |||| | ||| |||| || ||||| || | || || |||| || |||| Sbjct 142981 C-GGCAGCCGTTCTTGGTGTAGGCTTCAGGTTGCTTCAARAAATCGACGACCTCAGCCAA 142923 Query 13157 TTCATCCTTCGCGGCGTC 13174 |||| ||| || |||| Sbjct 142922 TTCAAGCTTTGCTCCGTC 142905 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613498771944840