Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq110 154 2e-32 seq55 86.0 1e-11 >seq110 Length=137954 Score = 154 bits (170), Expect = 2e-32 Identities = 546/839 (65%), Gaps = 28/839 (3%) Strand=Plus/Minus Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708 ||||||||||||||||||||| |||| || || || ||||| || | || ||||| Sbjct 11743 CTTCTCGAAAAAGTTGGTCTTTCCCTGCAGCGAGATCATCTCCATCCACTCAAAGGGGTT 11684 Query 159709 CTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTC 159768 || ||| |||| || || || || |||||| | ||| || || || Sbjct 11683 GGGGGTCTGGTAGTGCTTTGGGGCACCCAGGGCGACCAGCAGGCGGTCGGCGCAGAACTC 11624 Query 159769 GATGTAGCTACA-CATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCG 159827 |||||| || | ||| ||| |||| || || | ||| || ||||| || || Sbjct 11623 GATGTA-CTGCTGCATGAGCTTCGAGTTCATGCCGATGAGCTCTACCGGGAGGGCGTCGC 11565 Query 159828 ACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGTTCGTACC 159887 | || ||||| || || ||||| || | ||| ||||||| | || || ||| Sbjct 11564 TGACGAATTCCTTTTCGATGTCGACGGCGTTGGTGACAATCTCCACGATGCGCTCGGGGG 11505 Query 159888 CCGGCTTGC---CCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTC 159944 | ||||| ||| ||| || | || | ||| |||||||||||||| |||| Sbjct 11504 CGAGCTTGTTGACCAGCTTGTTGT------AGAGCATGCAGGCAAAGTCGCAGTGGAGTC 11451 Query 159945 CCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTT 160004 ||||||| || ||||||| ||||||||| | | ||||| ||||||| || ||| | Sbjct 11450 CCTCGTCGCGCGAGATGAGCTCGTTGGAAAAGGCCAGGCCGGGCATGAGGCCGCGCTTCT 11391 Query 160005 TGAGCCAAAAAATGGCCGCAAAAGCACCGCTA-AAAAAGATCCCCTCCACGGCCGCAAAC 160063 |||||||||| |||| |||| |||| || | | |||||||| ||||||||| | ||| Sbjct 11390 TGAGCCAAAAGATGG-CGCAGAAGCTCCCCGAGAAAAAGATTCCCTCCACGACGCAAAAG 11332 Query 160064 GCCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGTC-CACCTTT---TGGCCCA 160119 || ||| || ||| |||| ||| | || | ||| |||| | |||||| Sbjct 11331 GCGACGCACCGCTCCGCAAAGCTGGCCAT----TCCCGAGTCGCACCACTGGAGGGCCCA 11276 Query 160120 TTCAGCCTTCTTTGCG-ATGCACGGCATGCGCTCGACGGCGTTAAACAATCTGTCCTGCT 160178 ||||| ||| || | ||| || | |||| ||||| | | | | || || Sbjct 11275 GCGGGCCTT-TTTCCGCACGCAGGGGACCGTGTCGATGGCGTGGAGGAGACGGAGCTTCT 11217 Query 160179 CCTTCACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCACATTTT 160238 ||| ||||||||| || | || || |||||| | || | ||| | || | Sbjct 11216 CCTCGGAATCCTTGATGTACGTGTCGATGAGGAGCGAGTAGGTCTCCGAGTGGATGTTCT 11157 Query 160239 CGATGGCCATCTGAAAGTTGTAGAAATA-TGTCGCCTCCAGATACTGCACCTCCTGTGTG 160297 | | || ||||| ||| |||||| | ||| |||| | |||| | ||| | Sbjct 11156 CCACCGCGATCTGGAAGCCGTAGAAGCAGCGTC-CCTCGGGCGACTGGAGCTCGGTCATA 11098 Query 160298 AACCTTTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCAACACG 160357 || | || |||| || | || || | |||||| | ||||||||||| |||| | | Sbjct 11097 AAGTTCTGTGCCAGGTTTTCGTTGACGATCCCGTCCGATGCCGCAAAGAAGGCCAGGATG 11038 Query 160358 TGAGAGATGAAATGTCTCTCGTCTTTGTTGAGTCTCTTTTCCCAGTGTGTCACGTCTTGG 160417 || |||||| |||| |||| |||| | ||| |||| | | || ||| | Sbjct 11037 TGGCTGATGAAGTGTCGCTCG---TTGTCGGACAGCTTGACCCAATCGGCCATGTCCGAG 10981 Query 160418 GCCAAATCAACCTCTTCCGCGCTCCAATTGGCAGCCTGAGCAGTTTTGTACATGGCCCA 160476 | | ||| | |||||||||| |||| || |||| || |||||||||| |||| Sbjct 10980 CCGAGATCGATCTCTTCCGCGGTCCAGAAGGAGGCCTCGGCCTTTTTGTACATTTCCCA 10922 >seq55 Length=197180 Score = 86.0 bits (94), Expect = 1e-11 Identities = 128/179 (72%), Gaps = 2/179 (1%) Strand=Plus/Minus Query 116106 TACCAAAGATCTGCAGACATGGGGTTGGGCGTACCCTTTAACGTTGCGAGCTACGCGCTA 116165 ||||| | || || |||||||| |||| || ||||| ||| |||| ||||||||||| Sbjct 130007 TACCAGCGGTCGGCCGACATGGGCCTGGGGGTCCCCTTCAACATTGCCAGCTACGCGCTC 129948 Query 116166 CTGACTCATATTATGGCACATTTGGCGGACCTGGAAG-TCGGAGAATTGATACACTCTAT 116224 ||||| || | |||| || || | | | | ||| ||| || || | ||| | | Sbjct 129947 CTGACGCACCTCGTGGCCCACGTGACCGGGC-GCAAGCCCGGGGAGCTGGTCCACACGCT 129889 Query 116225 TGGGGACGCGCACATCTACACCAACCATGTGGCGCAGCTCGAGCTGCAGGTGAAGCGGG 116283 |||||||| ||| ||||| |||||| || | || |||| || |||| || |||||| Sbjct 129888 GGGGGACGCCCACGTCTACCTCAACCACGTCGAGCCGCTCAAGGAGCAGCTGGAGCGGG 129830 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795144276555440