Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq386 159 8e-34 seq456 134 3e-26 seq141 127 5e-24 seq3 109 1e-18 seq22 95.1 3e-14 >seq386 Length=39556 Score = 159 bits (176), Expect = 8e-34 Identities = 166/218 (76%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || | ||| || || || |||||||||| |||||||||| ||| || Sbjct 12110 CGAAGACGGAGAACCAAGTGAAGGGTAGATTCCTTTTGGATGTTGTAGTCACTCAAGGTG 12051 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || |||||||| |||||||| || ||||| ||||||||||| || ||| ||||||| Sbjct 12050 CGGCCGTCTTCCAGTTGCTTTCCAGCAAAGATAAGACGCTGCTGATCAGGAGGAATTCCT 11991 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||||||| || | ||| || | || ||| ||||||| Sbjct 11990 TCCTTGTCCTGGATCTTGGTCTTCACGTTGTCAATGGTATCAGATGGTTCCACATCCAGT 11931 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || |||||||| ||||| || |||||||| ||||| Sbjct 11930 GTAATAGTCTTACCAGTGAGCGTCTTCACAAAGATTTG 11893 Score = 132 bits (146), Expect = 1e-25 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || | ||| ||||| || |||||||||| |||||||| | ||| Sbjct 11426 CGAAGACGAAGCACTAAGTGAAGAGTAGATTCCTTTTGGATATTGTAGTCGCTTAGGGTC 11367 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 ||||||||||||| |||||||| || || || | | |||||| |||||| ||||||| Sbjct 11366 CTTCCATCTTCCAATTGCTTTCCAGCAAAAATCAATCTCTGCTGATCCGGAGGAATTCCT 11307 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||| || || | |||||| | | || ||||||||| Sbjct 11306 TCCTTGTCCTGGATCTTGGTCTTGACATTGTCAATGGTGTCCGAAGGCTCGACATCCAAC 11247 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || | |||||| || ||||| || Sbjct 11246 GTGATTGTCTTGCCGGTCAAAGTTTTTACGAAAATCTG 11209 Score = 132 bits (146), Expect = 1e-25 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | ||||| ||||| ||||| |||||||| || | |||||||| | ||| Sbjct 11654 CGAAGACGAAGGACCAGGTGCAGAGTGGACTCCTTCTGAATATTGTAGTCGCTTAGGGTC 11595 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 ||||||||||||| |||||||| || || || | | |||||| || || |||||| Sbjct 11594 CTTCCATCTTCCAATTGCTTTCCAGCAAAAATCAATCTCTGCTGATCAGGTGGGATTCCT 11535 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||||||||| ||| || || | ||||| | | || ||||||||| Sbjct 11534 TCCTTGTCCTGAATCTTGGTCTTGACATTGTCAATAGTGTCCGAAGGCTCGACATCCAAC 11475 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| |||||||| || || ||||| ||||| Sbjct 11474 GTGATAGTCTTTCCCGTGAGGGTCTTGACAAAGATTTG 11437 >seq456 Length=31050 Score = 134 bits (148), Expect = 3e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | ||| || || || ||||| |||| ||||||||| || || | ||||| Sbjct 6844 AGCACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCC 6785 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| ||||||||||| |||||||||||||||||||| ||| ||||||||| ||| Sbjct 6784 TCCAATTGCTTTCCGGCAAAGATGAGACGCTGCTGGTCGGGAGGAATTCCTTCCTTGTCC 6725 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| || ||| |||| |||||| | | ||| || |||| ||||| ||| Sbjct 6724 TGGATCTTGGTTTTGACGTTGTCGATGGTGTCGGACGGTTCCACGTCCAGGGTGATGGTC 6665 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || || |||||||| || Sbjct 6664 TTGCCAGTCAGGGTCTTTACAAAAATCTG 6636 >seq141 Length=126064 Score = 127 bits (140), Expect = 5e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473 || |||||| | || || || || |||||||||| |||||| ||| || ||| | || Sbjct 117143 TCGCAGGACCAAATGCAGGGTGGATTCCTTTTGGATGTTGTAATCACTCAGAGTTCGACC 117084 Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533 ||| |||| ||||||||||| ||||| ||||| ||||| ||||| |||||||| Sbjct 117083 ATCCTCCAATTGCTTTCCGGCAAAGATAAGACGTTGCTGATCCGGTGGGATTCCTTCCTT 117024 Query 199534 CTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGAT 199593 ||||| ||||| ||| ||| |||| ||||| | || || ||||| | ||||| Sbjct 117023 GTCCTGGATCTTGGTCTTGACGTTGTCGATCGTGTCCGATGGCTCGACATCGAGAGTGAT 116964 Query 199594 CGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || ||||| || || || || ||||| Sbjct 116963 GGTCTTTCCGGTGAGGGTCTTGACGAAGATTTG 116931 >seq3 Length=497493 Score = 109 bits (120), Expect = 1e-18 Identities = 135/185 (73%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | ||| || || || |||||||||| |||||| || ||| || | ||||||| Sbjct 135376 AGAACCAAGTGAAGGGTGGATTCCTTTTGGATGTTGTAATCGCTCAAGGTGCGTCCATCT 135317 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| ||||||||||| ||||| ||||| || || || ||| |||||||| ||| Sbjct 135316 TCCAATTGCTTTCCGGCAAAGATAAGACGTTGTTGATCAGGAGGGATTCCTTCCTTGTCC 135257 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| ||| || | ||||| | || || ||||| | ||||| ||| Sbjct 135256 TGGATCTTGGTCTTGACGTTGTCAATAGTGTCCGATGGCTCGACATCAAGAGTGATGGTC 135197 Query 199598 TTACC 199602 ||||| Sbjct 135196 TTACC 135192 Score = 84.2 bits (92), Expect = 5e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 200935 CTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAG 200994 |||||||| ||||||||||| |||||||||||| | || ||| |||||||||| |||| Sbjct 135291 CTTATCTTTGCCGGAAAGCAATTGGAAGATGGACGCACCTTGAGCGATTACAACATCCAA 135350 Query 200995 AAAGAGTCTACTCTTCACCTTGTT 201018 || || || || |||||| | ||| Sbjct 135351 AAGGAATCCACCCTTCACTTGGTT 135374 >seq22 Length=300247 Score = 95.1 bits (104), Expect = 3e-14 Identities = 132/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || | || ||||| || ||||| |||| ||| ||||| |||||| Sbjct 203629 CGAAGACGAAGCACCAAATGAAGAGTGGATTCCTTCTGGATGTTATAGTCGCTCAAAGTA 203570 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| |||| |||||||| || || || ||||||||||| || ||| ||||||| Sbjct 203569 CGACCATCCTCCAATTGCTTTCCAGCAAATATAAGACGCTGCTGATCGGGAGGAATTCCT 203510 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || || ||||| ||| || || | || || | || ||||||||||| Sbjct 203509 TCCTTGTCTTGGATCTTGGTCTTGACATTATCAATCGTATCAGATGGCTCTACATCCAAA 203450 Query 199589 GTGAT 199593 ||||| Sbjct 203449 GTGAT 203445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178904999678633