Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq456 109 6e-19 seq386 100 3e-16 seq141 100 3e-16 >seq456 Length=31050 Score = 109 bits (120), Expect = 6e-19 Identities = 139/189 (74%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| ||||| ||||||||| || ||||| | || || | ||||| ||||| || Sbjct 6823 TCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCCAATTGCTTTCCGGCAAAG 6764 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 || | ||||||||||||| || | | ||||||||| |||||| | |||| ||| Sbjct 6763 ATGAGACGCTGCTGGTCGGGAGGAATTCCTTCCTTGTCCTGGATCTTGGTTTTGA-CGTT 6705 Query 46523 G-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | |||||| || |||||| |||| |||||||| ||||| ||||| || || || Sbjct 6704 GTCGATGGTGTCGGACGGTTCCACGTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTTAC 6645 Query 46582 AAAGATTTG 46590 ||| || || Sbjct 6644 AAAAATCTG 6636 >seq386 Length=39556 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 |||||||||| ||| | |||| || | || ||||||||||| |||||||| Sbjct 11888 CCTCCTCTTAGACGGAGGACCAAGTGAAGCGTGGATTCCTTTTGGATGTTGTAGTCACTC 11829 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 | ||||| |||| || || ||||| || || || ||||| | |||||| || | || Sbjct 11828 AAGGTGCGGCCGTCTTCCAGTTGCTTTCCAGCAAAAATCAATCTCTGCTGATCAGGTGGG 11769 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | ||||||||| |||||| |||| | | | | || || || ||| || Sbjct 11768 ATTCCTTCCTTGTCCTGGATCTTGGTCTTCACGTTATCAATGGTATCAGACGGTTCAACG 11709 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 |||| |||||||| || || || || || || ||||||||||||||| Sbjct 11708 TCCAGTGTGATGGTCTTACCAGTGAGTGTCTTCACAAAGATTTGCATT 11661 Score = 96.9 bits (106), Expect = 4e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| | | ||| | ||||| |||| || |||||| || |||||||||||| | Sbjct 11660 CCTCCACGAAGACGAAGGACCAGGTGCAGAGTGGACTCCTTCTGAATATTGTAGTCGCTT 11601 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || || | | || || | ||||| || || || ||||| | |||||| || | || Sbjct 11600 AGGGTCCTTCCATCTTCCAATTGCTTTCCAGCAAAAATCAATCTCTGCTGATCAGGTGGG 11541 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | ||||||||| ||||| |||||| | | | ||||| | || ||| Sbjct 11540 ATTCCTTCCTTGTCCTGAATCTTGGTCTTGACATTGTCAATAGTGTCCGAAGGCTCGACA 11481 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 |||| |||||| || || ||||| || || || ||||||||||||||| Sbjct 11480 TCCAACGTGATAGTCTTTCCCGTGAGGGTCTTGACAAAGATTTGCATT 11433 Score = 93.3 bits (102), Expect = 5e-14 Identities = 138/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||||||||| |||||||| | ||||| |||| || || ||||| || || || Sbjct 12080 TCCTTTTGGATGTTGTAGTCACTCAAGGTGCGGCCGTCTTCCAGTTGCTTTCCAGCAAAG 12021 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 || | |||||||| || | || | | ||||||||| |||||| |||| | ||| Sbjct 12020 ATAAGACGCTGCTGATCAGGAGGAATTCCTTCCTTGTCCTGGATCTTGGTCTTCA-CGTT 11962 Query 46523 G-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | || || | ||||||||||| || || || || || || ||||| || || Sbjct 11961 GTCAATGGTATCAGATGGTTCCACATCCAGTGTAATAGTCTTACCAGTGAGCGTCTTCAC 11902 Query 46582 AAAGATTTGCATT 46594 ||||||||||||| Sbjct 11901 AAAGATTTGCATT 11889 Score = 87.8 bits (96), Expect = 2e-12 Identities = 132/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||||||||||||||||||| ||| || | | || || | ||||| || || || Sbjct 11396 TCCTTTTGGATATTGTAGTCGCTTAGGGTCCTTCCATCTTCCAATTGCTTTCCAGCAAAA 11337 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 ||||| | |||||| || | || | | ||||||||| |||||| |||||| | Sbjct 11336 ATCAATCTCTGCTGATCCGGAGGAATTCCTTCCTTGTCCTGGATCTTGGTCTTGACATTG 11277 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | ||||| | || ||||||| |||||| || ||||| |||| ||||| || Sbjct 11276 TCAATGGTGTCCGAAGGCTCGACATCCAACGTGATTGTCTTGCCGGTCAAAGTTTTTACG 11217 Query 46583 AAGATTTG 46590 || || || Sbjct 11216 AAAATCTG 11209 >seq141 Length=126064 Score = 100 bits (110), Expect = 3e-16 Identities = 163/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 |||||||| || |||| |||| ||||| || ||||||||||| ||||| || Sbjct 117154 CCTCCTCTCAATCGCAGGACCAAATGCAGGGTGGATTCCTTTTGGATGTTGTAATCACTC 117095 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 ||||| || | || || | ||||| ||||| || || | || ||||| || | || Sbjct 117094 AGAGTTCGACCATCCTCCAATTGCTTTCCGGCAAAGATAAGACGTTGCTGATCCGGTGGG 117035 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCC-ACCGTGTCGCTCGAT---TC 46542 | | ||||||||| |||||| |||||| ||| | | | |||||| |||| || Sbjct 117034 ATTCCTTCCTTGTCCTGGATCTTGGTCTTGA-CGTTGTCGATCGTGTC---CGATGGCTC 116979 Query 46543 CACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||||| | |||||||| || || || || || || || ||||||||||| Sbjct 116978 GACATCGAGAGTGATGGTCTTTCCGGTGAGGGTCTTGACGAAGATTTGCAT 116928 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565230635037480