Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq110 327 1e-84 seq456 132 5e-26 seq141 120 3e-22 seq386 113 5e-20 >seq110 Length=137954 Score = 327 bits (362), Expect = 1e-84 Identities = 585/837 (70%), Gaps = 28/837 (3%) Strand=Plus/Minus Query 132625 TTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCGTCATAAAATCCAAGGGGTTG 132684 ||||| ||||| || || ||||||| || || || | | ||| | || ||||||||| Sbjct 11742 TTCTCGAAAAAGTTGGTCTTTCCCTGCAGCGAGATCATCTCCATCCACTCAAAGGGGTTG 11683 Query 132685 GCTGTGTTGTAGTGCTTGGTGCCGATCAGGTCGACGAGCAGCCTGTCGGCCACGAACTCG 132744 | || | ||||||||| | | | |||| |||| ||||| | |||||| ||||||| Sbjct 11682 GGGGTCTGGTAGTGCTTTGGGGCACCCAGGGCGACCAGCAGGCGGTCGGCGCAGAACTCG 11623 Query 132745 ATGTATTGCGACATG-GTTTCGCAATTAAGTCCCAGCAGACGCACCGGCAGCGCTTCGGT 132803 ||||| ||| |||| | |||| | || | || | || ||||| || || ||| | Sbjct 11622 ATGTACTGCTGCATGAGCTTCG-AGTTCATGCCGATGAGCTCTACCGGGAGGGCGTCGCT 11564 Query 132804 GA-GAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTCCCTAACGCGCGCCGCGC 132862 || ||| | || |||||| |||| |||| |||||| || ||| | |||| | | | Sbjct 11563 GACGAATTCCTTT-TCGATGTCGACGGCGTTGGTGACAATCTCCACGATGCGCTCGGGGG 11505 Query 132863 TCGGCC-GTTGCACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCG 132921 || |||| |||| | ||| | | || ||| ||||||||||| || | |||||| Sbjct 11504 CGAGCTTGTTG-ACCAGCTTGTTGTAGAGCATGCAGGCAAAGTCGCAGTGGAGTCCCTCG 11446 Query 132922 TCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGC 132981 || | || ||||| |||||| || | || |||||||||||||||||| || |||||| Sbjct 11445 TCGCGCGAGATGAGCTCGTTGGAAAAGGCCAGGCCGGGCATGAGGCCGCGCTTCTTGAGC 11386 Query 132982 CAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAA-GCCAC 133040 ||||| |||||| ||| || ||||| || |||| ||||| || | ||| ||| || || Sbjct 11385 CAAAAGATGGCGCAGAAGCTCCCCGAGAAAAAGATTCCCTCCAC-GACGCAAAAGGCGAC 11327 Query 133041 CAGGCGCTCGCCGAACGTGGCTTCTTTGC--TGGCGATCCAGCGCAGCGCCCATTCGGCC 133098 ||||| | || |||| | || | | || ||| | || ||||| |||| Sbjct 11326 GCACCGCTCCGCAAAGCTGGC--CATTCCCGAGTCGCACCACTGGAGGGCCCAGCGGGCC 11269 Query 133099 TTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAAACGGAGTTTCTCTTCCGAG 133158 |||| ||||| || | ||| |||||||||| | | |||||| ||||| || | Sbjct 11268 TTTTTCCGCACGCAGGGGACCGTGTCGATGGCGTGGAGGAGACGGAGCTTCTCCTC---G 11212 Query 133159 GAACGC---ACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATG 133215 ||| | | ||| |||||||||||| ||| || | |||||||| | |||||||| Sbjct 11211 GAATCCTTGATGTACGTGTCGATGAGGAGCGAGTAGGTCTCCGAGTGGATGTTCTCCACC 11152 Query 133216 GCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACG- 133274 ||||| || |||||||| ||||| || ||||| | ||| | || | | || | Sbjct 11151 GCGATCTGGAAGCCGTAGAAGCAGCGTCCCTCGGGCGACTGGA--GCTCGGTCATAAAGT 11094 Query 133275 -CTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCT 133333 || |||| |||||||||||||| ||||| || || || |||||||| | ||| Sbjct 11093 TCTGTGCCAGGTTTTCGTTGACGATCCCGTCCGATGCCGCAAAGAAGGCCAGGATGTGGC 11034 Query 133334 TGATGAAATGGCGCTCGTTGTCGTTCAAGCGCT---CCCAGTCGCGCGTGTCCTTGGACA 133390 ||||||| || |||||||||||| || ||| |||| ||| | ||||| | | Sbjct 11033 TGATGAAGTGTCGCTCGTTGTCGGACA---GCTTGACCCAATCGGCCATGTCCGAGCCGA 10977 Query 133391 GGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACATACTCCACA 133447 | || | ||| || ||||||| || || |||||||| ||||||||||| ||||| Sbjct 10976 GATCGATCTCTTCCGCGGTCCAGAAGGAGGCCTCGGCCTTTTTGTACATTTCCCACA 10920 >seq456 Length=31050 Score = 132 bits (146), Expect = 5e-26 Identities = 166/225 (74%), Gaps = 2/225 (1%) Strand=Plus/Plus Query 38247 CAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGAC 38306 || || || ||||| || || || ||||| ||||||||| | ||||| || | ||||| Sbjct 6636 CAGATTTTTGTAAAGACCCTGACTGGCAAGACCATCACCCTGGACGTGGAACCGTCCGAC 6695 Query 38307 AGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACA 38365 | | | | |||| | ||| || |||| ||||| || |||||||| ||||||| || Sbjct 6696 ACCATCGACAACG-TCAAAACCAAGATCCAGGACAAGGAAGGAATTCCTCCCGACCAGCA 6754 Query 38366 GCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACAT 38425 ||| ||||| | || || || || |||| || | |||||||| | |||||||||||| Sbjct 6755 GCGTCTCATCTTTGCCGGAAAGCAATTGGAGGATGGCCGCACCCTGAGCGACTACAACAT 6814 Query 38426 CCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||| |||||| | || || || |||||||| || ||| | || || Sbjct 6815 CCAGAAGGAATCCACCCTTCACTTGGTGCTTCGCTTGCGGGGAGG 6859 >seq141 Length=126064 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || ||||| || || |||||||| |||| |||||| | | Sbjct 116928 ATGCAAATCTTCGTCAAGACCCTCACCGGAAAGACCATCACTCTCGATGTCGAGCCATCG 116987 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| || | | | | |||| || |||| ||||| || ||||| || | || || Sbjct 116988 GACA-CGATCGACAACGTCAAGACCAAGATCCAGGACAAGGAAGGAATCCCACCGGATCA 117046 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || || || || | || || || || |||| || | || || || | || ||||| Sbjct 117047 GCAACGTCTTATCTTTGCCGGAAAGCAATTGGAGGATGGTCGAACTCTGAGTGATTACAA 117106 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||||||||| | || ||||||||||| ||||| |||||||| || Sbjct 117107 CATCCAAAAGGAATCCACCCTGCATTTGGTCCTGCGATTGAGAGGAGG 117154 >seq386 Length=39556 Score = 113 bits (124), Expect = 5e-20 Identities = 165/230 (72%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 ||||||||| || || || || ||||| || || |||||||| | ||||| || | | Sbjct 11661 AATGCAAATCTTTGTGAAGACACTCACTGGTAAGACCATCACACTGGACGTTGAACCGTC 11720 Query 38303 CGACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 || | | | | |||| | |||| || |||| ||||| || ||||| || | || Sbjct 11721 TGATACCATTGATAACG--TGAAGACCAAGATCCAGGACAAGGAAGGAATCCCACCTGAT 11778 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||| | | |||| || || || || ||||| |||| |||||| | | |||||| Sbjct 11779 CAGCAGAGATTGATTTTTGCTGGAAAGCAACTGGAAGACGGCCGCACCTTGAGTGACTAC 11838 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||||||||||| | ||||| || ||||| || ||| | ||||| || Sbjct 11839 AACATCCAAAAGGAATCCACGCTTCACTTGGTCCTCCGTCTAAGAGGAGG 11888 Score = 102 bits (112), Expect = 8e-17 Identities = 156/219 (71%), Gaps = 4/219 (2%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 ||||||||| || || || |||||||| || || || || || | || || || | | Sbjct 11889 AATGCAAATCTTTGTGAAGACGCTCACTGGTAAGACTATTACACTGGATGTGGAACCATC 11948 Query 38303 CGACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 || | | | | |||| | |||| || |||| ||||| || |||||||| | || Sbjct 11949 TGATACCATTGACAACG--TGAAGACCAAGATCCAGGACAAGGAAGGAATTCCTCCTGAT 12006 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||||| || || | || || || || ||||| |||| |||||| | | |||||| Sbjct 12007 CAGCAGCGTCTTATCTTTGCTGGAAAGCAACTGGAAGACGGCCGCACCTTGAGTGACTAC 12066 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||||||||||||| | || || || ||||| || ||| Sbjct 12067 AACATCCAAAAGGAATCTACCCTTCACTTGGTTCTCCGT 12105 Score = 89.7 bits (98), Expect = 5e-13 Identities = 151/215 (70%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 38247 CAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGAC 38306 || || ||||||||||| | || ||||| || ||||| | || |||||| | | ||| Sbjct 11209 CAGATTTTCGTAAAAACTTTGACCGGCAAGACAATCACGTTGGATGTCGAGCCTTCGGAC 11268 Query 38307 AGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACCAAC 38364 | | | | || | | |||| || |||| ||||| || |||||||| | || || | Sbjct 11269 ACCATTGACAATG--TCAAGACCAAGATCCAGGACAAGGAAGGAATTCCTCCGGATCAGC 11326 Query 38365 AGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACA 38424 || | | |||| || || || || |||| || | | ||||| | ||||||||| | Sbjct 11327 AGAGATTGATTTTTGCTGGAAAGCAATTGGAAGATGGAAGGACCCTAAGCGACTACAATA 11386 Query 38425 TCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||||||||| | || || || || ||||| ||| Sbjct 11387 TCCAAAAGGAATCTACTCTTCACTTAGTGCTTCGT 11421 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500165928876160