Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq386 118 4e-21 seq150 116 1e-20 seq21 109 2e-18 seq3 98.7 4e-15 seq22 86.0 2e-11 >seq386 Length=39556 Score = 118 bits (130), Expect = 4e-21 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | || || || || || || |||||||| |||||||| || ||||| ||| |||| Sbjct 11889 AATGCAAATCTTTGTGAAGACGCTCACTGGTAAGACTATTACACTGGATGTGGAACCATC 11948 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 ||||| |||||| | || || || || || ||||||||||||||||||||||| Sbjct 11949 TGATACCATTGACAACGTGAAGACCAAGATCCAGGACAAGGAAGGAATTCCTCCTGATCA 12008 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 || ||| | || || | || || ||||| ||||| || | || ||| || || || Sbjct 12009 GCAGCGTCTTATCTTTGCTGGAAAGCAACTGGAAGACGGCCGCACCTTGAGTGACTACAA 12068 Query 391229 TATTGATAAGGATGCAACACTTCACTTAGT 391258 || | ||||| | || |||||||| || Sbjct 12069 CATCCAAAAGGAATCTACCCTTCACTTGGT 12098 Score = 102 bits (112), Expect = 3e-16 Identities = 163/234 (70%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | || || || || ||||| |||||||| || || || || || |||||| | || Sbjct 11661 AATGCAAATCTTTGTGAAGACACTCACTGGTAAGACCATCACACTGGACGTTGAACCGTC 11720 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 ||||| |||||| | || || || || || ||||||||||| || |||||||| Sbjct 11721 TGATACCATTGATAACGTGAAGACCAAGATCCAGGACAAGGAAGGAATCCCACCTGATCA 11780 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 || | || ||||| | || || ||||| ||||| || | || ||| || || || Sbjct 11781 GCAGAGATTGATTTTTGCTGGAAAGCAACTGGAAGACGGCCGCACCTTGAGTGACTACAA 11840 Query 391229 TATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGGATAAATACA 391282 || | ||||| | || |||||||| || | | || |||||| ||| || Sbjct 11841 CATCCAAAAGGAATCCACGCTTCACTTGGTCCTCCGTCTAAGAGGAGGAATGCA 11894 Score = 96.9 bits (106), Expect = 1e-14 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 391056 ATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCTGATAAC 391115 |||||||| ||||| |||| || || || || || | ||||| || | || || | | Sbjct 11212 ATTTTCGTAAAAACTTTGACCGGCAAGACAATCACGTTGGATGTCGAGCCTTCGGACACC 11271 Query 391116 ATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAACGT 391175 ||||| | | || || || || || ||||||||||||||||| ||||| || | Sbjct 11272 ATTGACAATGTCAAGACCAAGATCCAGGACAAGGAAGGAATTCCTCCGGATCAGCAGAGA 11331 Query 391176 TTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAATATTGAT 391235 || ||||| | || || ||| | ||||||||||| || | || || ||||| | Sbjct 11332 TTGATTTTTGCTGGAAAGCAATTGGAAGATGGAAGGACCCTAAGCGACTACAATATCCAA 11391 Query 391236 AAGGATGCAACACTTCACTTAGT 391258 ||||| | || ||||||||||| Sbjct 11392 AAGGAATCTACTCTTCACTTAGT 11414 >seq150 Length=115733 Score = 116 bits (128), Expect = 1e-20 Identities = 251/372 (67%), Gaps = 20/372 (5%) Strand=Plus/Minus Query 451242 CTCCTGAAGAAATTTCATCT--ATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATA 451299 ||||||||||||| || | ||| |||| |||||||||||||| || ||| || Sbjct 55552 CTCCTGAAGAAAT--CAGCGGAATGATTCTACGAAAAATGAAAGAAACCGCCGAAGCCTA 55495 Query 451300 TATTGGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACA 451359 | | || | ||| | |||| ||| | || || ||||| || || || || || || Sbjct 55494 TCTCGGAACGGAAGTCAAGCATGCCGTAGTGACCGTCCCCGCATACTTTAACGACGCCCA 55435 Query 451360 ACGGCAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAA 451419 |||||| ||||| |||||||| || || || || | || || || |||| || Sbjct 55434 ACGGCAGGCAACGAAAGATGCCGGGACCATCGCAGGCATGAAAATTGAGCGTGTTATCAA 55375 Query 451420 TGAACCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaa 451479 ||||| ||||| ||||| | || || ||||| || || ||| | | ||| | Sbjct 55374 CGAACCCACAGCCGCTGCCATTGCGTACGGACT-CGACAAGCAAGA-----CCACGAAGA 55321 Query 451480 aaaTATTTTAGTATTTGATTTTGGTGGAGGAAC-----TCATGATACTTCTGTACTTTCA 451534 ||| ||||| || |||||||| ||||| ||||| | ||| |||| || || Sbjct 55320 AAACATTTTGGTCTTTGATTTGGGTGGTGGAACCTTCGACGTGACACTTTTG-----TCC 55266 Query 451535 ATTGAAGATGGGGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAA 451594 ||||| | || || ||||| || || || | |||| | || ||| | ||||| ||| Sbjct 55265 ATTGACAACGGCGTTTTTGAGGTCCTTGCCACGAGTGGTAACACCCATTTGGGAGGAGAA 55206 Query 451595 GATATTGATAAT 451606 ||| ||||| || Sbjct 55205 GATTTTGATTAT 55194 >seq21 Length=285816 Score = 109 bits (120), Expect = 2e-18 Identities = 443/691 (64%), Gaps = 13/691 (2%) Strand=Plus/Minus Query 450920 GGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGGAAATGTAGAA 450979 |||||||||||||||||||||| || ||||| ||||||| ||||||| ||| ||| Sbjct 159401 GGAATTGATCTTGGAACCACCTACTCGTGTGTCGGTGTTTGGCAAAATGACCGTGTCGAA 159342 Query 450980 ATTATAGCAAATGACCAAGGATCACGAACTACTCCTTCATGGGTAAGTTTTACGGATTCA 451039 || || || || |||||||| || ||||| ||||| | || || || || | Sbjct 159341 ATCATTGCCAACGACCAAGGTAACCGTACTACCCCTTCTTATGTTGCCTTCACTGAGACC 159282 Query 451040 GAAAGACTTTTAGGGCAAGCTGCTAAATCAATGGTAAATTCAAATGCCAAAAACACAGTA 451099 || | ||| | || | ||||| || || || |||||| | ||||| || Sbjct 159281 GAGCGTCTTATTGGAGATGCTGCCAAGTCTCAGGCCGCCATGAATGCCGATAACACCGTC 159222 Query 451100 TATGATGCTAAACGTTTAATTGGCCGTATGTATGATGATGATACTGTACAAAAAGAGAAA 451159 | || || || || || || || || | | ||||| | || ||| || | Sbjct 159221 TTCGACGCCAAGCGATTGATCGGACGCAAATTCACTGATGCCGCCGTCCAAGCTGACATG 159162 Query 451160 AAATTCTTTTCTTATGATGTAGTAAATCAAAAA--GGAA--AGCCCTATATTCAAG-TAA 451214 || || ||| | || || || | ||| | ||| || ||||| | Sbjct 159161 AAGCACTGGCCTTTCGGAGT--TATCTCCGGACCCGGAGGTACCCCCATCATCAAGGTCG 159104 Query 451215 ATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTA 451274 | || || || ||| | || || || | |||||||| || ||||||||||| | Sbjct 159103 AGTACAAGGGAGAATCCAAGACCTTCAAGGCCGAAGAAATCAGTTCCATGGTTCTTACGA 159044 Query 451275 AAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACTG 451334 | ||||| || | || || ||| | || ||| | | || || | || | Sbjct 159043 AGATGAAGGACATTGCCGAGGCATACTTGGGCAAGGAAGTCAAGAACGCTGTTGTCACCG 158984 Query 451335 TTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCTG 451394 | || ||||| ||||| || | || || ||||| || || ||||| ||| ||| | | Sbjct 158983 TACCTGCTTACTTCAACGACTCTCAGCGTCAAGCTACCAAGGATGCCGGATCCATTTCCG 158924 Query 451395 GTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGACTAG 451454 | | ||||||||||| ||||| || |||||||| || ||||| | || || ||| | | Sbjct 158923 GACTTAATGTTCTTCGTATTATCAACGAACCTACCGCCGCTGCCATCGCCTACGGA-TTG 158865 Query 451455 GAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGAGGAACTC 451514 || ||| | | ||| ||||| ||| | | | || ||| |||| ||||| || Sbjct 158864 GA----CAAGA-AGGGAGACGAAAAGAATGTCCTCATTTTCGATCTTGGAGGAGGTACCT 158810 Query 451515 ATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAACCAATGGTG 451574 |||| ||| | ||| | || ||||| || | || ||||| ||||| || || | Sbjct 158809 TTGATGTCTCTCTTCTTACCATCGAAGAAGGAATCTTCGAAGTCAAGGCCACTGCCGGAG 158750 Query 451575 ATACTCATCTAGGAGGTGAAGATATTGATAA 451605 |||| || | ||||| || ||| | ||||| Sbjct 158749 ATACCCACTTGGGAGGAGAGGATTTCGATAA 158719 >seq3 Length=497493 Score = 98.7 bits (108), Expect = 4e-15 Identities = 131/182 (72%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 391077 GGTAAAACTATTACTCTTGATGTTGAATCATCTGATAACATTGAAGCTATTAAACAAAAA 391136 ||||| || || ||||||||||| || |||| || | ||||| | || || Sbjct 135192 GGTAAGACCATCACTCTTGATGTCGAGCCATCGGACACTATTGACAACGTCAAGACCAAG 135251 Query 391137 ATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAACGTTTAATTTTCTCAGGGAAACAA 391196 || || || ||||||||||| |||||||||||||||||| | || || | || || ||| Sbjct 135252 ATCCAGGACAAGGAAGGAATCCCTCCTGATCAACAACGTCTTATCTTTGCCGGAAAGCAA 135311 Query 391197 CTTGAAGATGGAAGAACTTTGGCGGATTATAATATTGATAAGGATGCAACACTTCACTTA 391256 | ||||||||| | || ||| ||||| || || | ||||| | || |||||||| Sbjct 135312 TTGGAAGATGGACGCACCTTGAGCGATTACAACATCCAAAAGGAATCCACCCTTCACTTG 135371 Query 391257 GT 391258 || Sbjct 135372 GT 135373 >seq22 Length=300247 Score = 86.0 bits (94), Expect = 2e-11 Identities = 130/184 (71%), Gaps = 1/184 (1%) Strand=Plus/Plus Query 391075 CTGGTAAAACTATTACTCTTGATGTTGAATCATCTGATAACATTGAAGCTATTAAACAAA 391134 |||| ||| | || ||| | ||||| || ||||||||| ||||| | | || | Sbjct 203435 CTGG-AAAGCAATCACTTTGGATGTAGAGCCATCTGATACGATTGATAATGTCAAGACCA 203493 Query 391135 AAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAACGTTTAATTTTCTCAGGGAAAC 391194 | || ||||| ||||||||||||||||| ||||| || ||| | || || | || || | Sbjct 203494 AGATCCAAGACAAGGAAGGAATTCCTCCCGATCAGCAGCGTCTTATATTTGCTGGAAAGC 203553 Query 391195 AACTTGAAGATGGAAGAACTTTGGCGGATTATAATATTGATAAGGATGCAACACTTCACT 391254 || | || ||||| | |||||| || ||||| || | ||||| | || ||||| | Sbjct 203554 AATTGGAGGATGGTCGTACTTTGAGCGACTATAACATCCAGAAGGAATCCACTCTTCATT 203613 Query 391255 TAGT 391258 | || Sbjct 203614 TGGT 203617 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975690580032692