Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq21 197 1e-44 seq150 131 1e-24 seq23 107 1e-17 seq2 91.5 1e-12 >seq21 Length=285816 Score = 197 bits (218), Expect = 1e-44 Identities = 928/1452 (64%), Gaps = 35/1452 (2%) Strand=Plus/Plus Query 517274 ATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGT 517333 |||||||||||||| | || || ||| |||||||| || ||| | | ||| Sbjct 157966 ATACCATTGGCATCAATGTCGAAGCAGACATCAATTTGTGGTTGCCCACGAGGCATAGGA 158025 Query 517334 GGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCA 517393 ||||| || || | || || |||| || |||| || || || || | ||||| Sbjct 158026 GGGATTCCGTCGAGGTTGAACTTTCCGAGGATATTGTTGTCCTTGGTCATCGAACGTTCT 158085 Query 517394 CCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCTG 517453 || ||||| | |||||| ||| | | ||| || || | || || | || |||| Sbjct 158086 CCTTCGAAGACCTGGATAAGAACACCGGGTTGGTTGTCGGCGTAGGTAGAGAAGG-TCTG 158144 Query 517454 GATTTT-TTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCTGC 517512 | | || || ||||| || |||||||| | || | | ||||| | || ||||| Sbjct 158145 GGTCTTCTTGGCAGGAACGGTAGTGTTTCTCTTGATGAGGGTAGTCATGACTCCTCCTGC 158204 Query 517513 TGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTTTC 517572 ||||| | |||||| ||||||||||||||||| | |||| || | ||| ||||| Sbjct 158205 GGTTTCGAGACCAAGGGAAAGAGGAGTGACATCCAACAGGAGAAGTTCGGAAAGCTTTTC 158264 Query 517573 --ATCAGTTTGACCAAC--AAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTT 517628 | || || | | |||| |||| || || | | || || ||||||| |||| Sbjct 158265 GGACTTGTCGGATCCGCTCAAGA-TAGCGGCCTGGACGGTGGCTCCGAATGCAACGGCTT 158323 Query 517629 CATCAGGATTAACAG--TTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTG 517686 |||| || || | || || || |||| || || ||||| || | | || | | | Sbjct 158324 CATCGGGGTTGATAGACTTGCAG--AGTTCCTTTCCGTTGAAGAACTCAGTGAGCA-TGG 158380 Query 517687 TCTT-ACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATT 517745 ||| | ||| || ||||| | ||||||||||| | || ||||||| || | | Sbjct 158381 TCTGGATCTTGGGGATACGGGTGGATCCTCCAACAAGGACGATTTCATCAACTCCGGCCT 158440 Query 517746 TATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCGCTCTAAACAAGT 517805 | | || | ||| ||||| ||||| ||| || | | | | || ||| Sbjct 158441 TGGAGATCTTGGCATCTCTCAAAACCTTTTCGCAGGGCTCCATGCACTTCTTGAAGTAGT 158500 Query 517806 C--TGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATCAATTCCTTC 517863 | || ||| || ||||| || | || | ||| |||| |||| || || || Sbjct 158501 CCATGTTCAAG--TCCTCGAAACGGGCACGGGTGATGGTGGCATTGAAATCGATACCGTC 158558 Query 517864 GAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACG 517923 || | || |||| |||||| | ||||| || ||||| || | ||| || ||||| Sbjct 158559 AAAGAGGGAGTCAATTTCAATGTGGGCCTGAGTAGAGGAAGAAAGAGTACGCTTGGCACG 158618 Query 517924 TTCACATGCTGTCCTTAGTCTTCGTA-AG-GCTTTTGCTGATTGAT--TCAAATCTGTTT 517979 ||| || || || | || | || | || || |||| || | ||| || | | Sbjct 158619 TTCGCAAGCGGTACGAAGACGACGGAGAGAGC----GCTGGTTCTTGCTCATGTCCTTCT 158674 Query 517980 TATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCAC 518039 | | | ||||||||| || | | | || | || ||||| ||||| || | Sbjct 158675 TGTGTCGTCTCTTGAAGTCGGTGAGGAAGTAGTCAACCATTCGGTTATCGAAATCCTCTC 158734 Query 518040 CTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACA 518099 ||||||| | |||| ||| | || || | |||| ||| | ||| ||||| | | | Sbjct 158735 CTCCCAAGTGGGTATCTCCGGCAGTGGCCTTGACTTCGAAGATTCCTTCTTCGATGGTAA 158794 Query 518100 AAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGT 518159 ||||| |||||| ||| || || || | ||| ||||| || |||||| |||| || Sbjct 158795 GAAGAGAGACATCAAAGGTACCTCCTCCAAGATCGAAAATGAGGACATTCTTTTC---GT 158851 Query 518160 CTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCA 518219 || || || || | || || || | ||||| || || ||||| || ||||| | | Sbjct 158852 CTCCCTTCTTGTCCAATCCGTAGGCGATGGCAGCGGCGGTAGGTTCGTTGATAATACGAA 158911 Query 518220 AAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAA 518279 ||||||||| || | ||| ||| ||||| || || ||||| | || || ||||| | Sbjct 158912 GAACATTAAGTCCGGAAATGGATCCGGCATCCTTGGTAGCTTGACGCTGAGAGTCGTTGA 158971 Query 518280 AATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTTGCCG 518339 | || ||||| || || | ||| || | | ||||| || || | || || || Sbjct 158972 AGTAAGCAGGTACGGTGACAACAGCGTTCTTGACTTCCTTGCCCAAGTATGCCTCGGCAA 159031 Query 518340 TTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGG--GAATATTGCTTGGA 518397 | | ||||| || | | || ||| || |||| ||| | ||| | |||||| Sbjct 159032 TGTCCTTCATCTTCGTAAGAACCATGGAACTGATTTCTTCGGCCTTGAAGGT--CTTGGA 159089 Query 518398 TTCATTTTGATATGATAC-TTCAAAATATGGTTTATTACCAA--CATTAATAACTTTAAA 518454 ||| | || || || | || || | | | | |||||| || Sbjct 159090 TTCTCCCTTGTACTCGACCTTGATGATGGGGGTACCTCCGGGTCCGGAGATAACTCCGAA 159149 Query 518455 TGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCG 518514 ||||||| ||||| || | ||| || ||| | || | | || || ||||| Sbjct 159150 AGGCCAGTGCTTCATGTCAGCTTGGACGGCGGCATCAGTGAATTTGCGTCCGATCAATCG 159209 Query 518515 TTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCC 518574 || || || || | || || | ||| || || || ||| | ||||| |||||||| Sbjct 159210 CTTGGCGTCGAAGACGGTGTTATCGGCATTCATGGCGGCCTGAGACTTGGCAGCATCTCC 159269 Query 518575 AATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATC 518634 ||| ||| | || ||||| || || | |||||| || || || || || |||||||| || Sbjct 159270 AATAAGACGCTCGGTCTCAGTGAAGGCAACATAAGAAGGGGTAGTACGGTTACCTTGGTC 159329 Query 518635 ATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCC 518694 || ||||| ||||| || |||||||||| ||||| ||||| | || ||||| Sbjct 159330 GTTGGCAATGATTTCGACACGGTCATTTTGCCAAACACCGACACACGAGTAGGTGGTTCC 159389 Query 518695 TAAATCAATACC 518706 | |||||| || Sbjct 159390 AAGATCAATTCC 159401 >seq150 Length=115733 Score = 131 bits (144), Expect = 1e-24 Identities = 238/348 (68%), Gaps = 3/348 (1%) Strand=Plus/Plus Query 518018 AGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGG 518077 || |||| |||||||||||| |||||||| | || || || ||| || || | Sbjct 55189 AGTCGATAATCAAAATCTTCTCCTCCCAAATGGGTGTTACCACTCGTGGCAAGGACCTCA 55248 Query 518078 AAAAGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAA 518137 |||| || | |||| |||||||| || || || |||||||||||||| |||||| Sbjct 55249 AAAACGCCGTTGTCAATGGACAAAAGTGTCACGTCGAAGGTTCCACCACCCAAATCAAAG 55308 Query 518138 ATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCA 518197 | | | || ||| | |||||| || || || || ||||||| ||||| || Sbjct 55309 ACCAAAATGTTTTCTTCGTGGTCTTG---CTTGTCGAGTCCGTACGCAATGGCAGCGGCT 55365 Query 518198 GTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTG 518257 || ||||| || |||| | | || || | || || || | || |||||||| || Sbjct 55366 GTGGGTTCGTTGATAACACGCTCAATTTTCATGCCTGCGATGGTCCCGGCATCTTTCGTT 55425 Query 518258 GCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCT 518317 || || | ||| | |||||||| ||||| || || || | ||||||| | ||||| Sbjct 55426 GCCTGCCGTTGGGCGTCGTTAAAGTATGCGGGGACGGTCACTACGGCATGCTTGACTTCC 55485 Query 518318 TTACCAATATAAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATT 518365 | || | ||| || || |||| ||||||||| | || ||||||| Sbjct 55486 GTTCCGAGATAGGCTTCGGCGGTTTCTTTCATTTTTCGTAGAATCATT 55533 >seq23 Length=297195 Score = 107 bits (118), Expect = 1e-17 Identities = 451/702 (64%), Gaps = 22/702 (3%) Strand=Plus/Plus Query 518020 ACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAA 518079 ||| | ||| |||||||| |||||||| | |||| || || || |||| ||| Sbjct 25778 ACGTTGATCGAAATCTTCTCCTCCCAAGTGGGTATCACCGTTGGTGGCCAARACTTCGAA 25837 Query 518080 AAGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAAT 518139 || || || | | ||| | ||| ||||| || || || || | |||||||| Sbjct 25838 AACACCGGAGTCGATGGTCAACAAAGTGACATCGAATGTACCTCCTCCAAGATCAAAAAC 25897 Query 518140 AAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGT 518199 ||| ||||| |||| || | | || || | ||| || |||| ||||||||||| Sbjct 25898 AAGAACATTGGATTCTC---CTCCGGTCTTGTCCATACCGTAGGCAATGGCAGCAGCAGT 25954 Query 518200 TGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGC 518259 || || || || || | | || || | |||| || |||| ||||| || ||||| Sbjct 25955 AGGCTCGTTGATGATACGCTCGACCTTCATTCCAGAGATGGTTCCGGCATCCTTGGTGGC 26014 Query 518260 TTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTT 518319 ||| | || | |||||| || || ||||||||||||| ||| || | | | || || Sbjct 26015 TTGACGCTGGGCATCGTTGAAGTAAGCAGGAACAGTAACAACAGCGTTCTTGATATCCTT 26074 Query 518320 ACCAATATAAGCGCTTGCCGTTTGTTTCATTTTACTTAA-AATCATTGATGAAATTTGTT 518378 ||| | ||| ||| || ||||| || || || ||||| | |||| || || Sbjct 26075 ACCCAAGAAAGTTTCTGCGGTAGACTTCATCTT-CTGAAGGATCATGGCAGAAACTTCTT 26133 Query 518379 CTGGGGAATATTGCTTGGA-TTCATTTTGATA----TGATACTTCAAAATATGGTTTATT 518433 | |||| || |||||| ||| || | | ||| || | || ||||| | Sbjct 26134 CAGGGGCGTA---CTTGGATTTCTTTCCGCCAACAGTGA-CCTGGATCAT-GGGTTTGTC 26188 Query 518434 ACCAACATTAATAACTT--TAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCA 518491 | | | || ||| | || |||| | || | ||| || || |||| Sbjct 26189 CTTGTCGGAGACGATTTCGTAAGGAACAAG--TTTCTTGTCGGCTTGGACGGATTTGTCA 26246 Query 518492 TTAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCA 518551 ||| | | || || ||||| || |||| || | ||| || || || || | Sbjct 26247 GAAAATTTGCGTCCRATCAATCGCTTCACATCGAAGACAGTGTTTTCGGGGTTGATGGTG 26306 Query 518552 GCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTG---TCTCTGTAAATGAAACATAT 518608 ||||||| ||||| |||||||| | ||| | || | | || ||| | ||| || Sbjct 26307 GCTTGATTCTTGGCRGCATCTCCTACAAGACGCTCGGTGTTATCCAAAAAGGCAACGTAC 26366 Query 518609 GATGGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCAT 518668 || ||||| | || ||||| || || || |||||||||||||| ||||| | | Sbjct 26367 GAAGGAGTGATACGGTTACCCTGGTCGTTGGCAATAATTTCAACACGTCCATTCTTGAAG 26426 Query 518669 ACACCTACACAACTAAAAGTTGTTCCTAAATCAATACCAATA 518710 ||||| |||||| |||| ||||| | ||| ||||||||| Sbjct 26427 ACACCAACACAAGAGTAAGTGGTTCCGAGATCGATACCAATA 26468 >seq2 Length=515016 Score = 91.5 bits (100), Expect = 1e-12 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 635438 AAATGTACCCTAATTTTGACAGAGGGAGATTCAGCTAAAACATTCGCTATGTCTGGTCTT 635497 || ||||| || ||| | ||||| |||||||| || ||| | || || |||||||||||| Sbjct 47291 AAGTGTACACTTATTCTAACAGAAGGAGATTCGGCCAAATCGTTGGCAATGTCTGGTCTT 47232 Query 635498 AATGTTATTGGAAGAGATTATTATGGAGTTTTCCCACTTAGAGGAAAACTTTTGAATGTT 635557 ||| |||||| | |||| |||||||||| || | | |||||| | |||||||| Sbjct 47231 TCTGTCATTGGACGCGATTTCTATGGAGTTTATCCTTTAAAAGGAAAGCCCCTGAATGTT 47172 Query 635558 AGGGATGC 635565 | ||||| Sbjct 47171 CGTGATGC 47164 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780767863999894