Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq39 152 6e-32 seq110 129 7e-25 seq108 118 1e-21 seq552 93.3 5e-14 seq137 86.0 8e-12 >seq39 Length=234218 Score = 152 bits (168), Expect = 6e-32 Identities = 283/412 (69%), Gaps = 20/412 (5%) Strand=Plus/Plus Query 15878 GATCTTACGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATT 15937 || ||| |||||||| || || || || | ||| || | ||| | || || || || || Sbjct 140100 GACCTTMCGATCAAATCGTCCGGGACGCAAGAGAGCTTGATCCAAAATGTCGACACGGTT 140159 Query 15938 CGTTGCGGCGATGACAACAATACCTG--TTTCGTTATCAAAACCATCCATCTCTGTCAAA 15995 || || || || | ||||| | |||| ||| || ||||||||||| |||| Sbjct 140160 GGTAGCAGCAATAGTGATGATACCGGGATTTCC--ATCGAATCCATCCATCTCCACCAAA 140217 Query 15996 AGCTGGTTAATAGTTTGTTCCCGTTCATCATT--CGCTGGCATACCACCAGCACTGCGTT 16053 | || || | || ||||| |||||||| || ||| |||| ||| |||| | |||| Sbjct 140218 ATTTGATTCACGGTCTGTTCACGTTCATCGTTTCCGCCGGCAAACC--CAGCGCCACGTT 140275 Query 16054 GCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGA 16113 | ||| || ||||| |||||||| || |||| ||||| || || | || Sbjct 140276 GACGTCCAACAGCATCGATCTCATCGATAAAGATAATGCACGGAGCRTTCTTCTTTGCTT 140335 Query 16114 CTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTG 16173 | |||||| ||| || ||||| ||| || ||||||||||||||||||||||| | Sbjct 140336 GTCCAAAGATATCGCGAACACGGGAGGCACCTACACCAACAAACATCTCCACAAACT--- 140392 Query 16174 CGGCGGAAC----ATTG--GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGA 16227 |||||| | || ||||||||||||| || ||| || |||| ||| || | Sbjct 140393 ---CGGAACCACTAATGGAGATGAAGGGGACACCAGCTTCTCCAGCAACTGCTTTAGCCA 140449 Query 16228 GAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAAT 16279 |||||||||||| ||||| || || | || | | ||||||| ||||| Sbjct 140450 AAAGAGTCTTACCAGTACCGGGAGGTCCATCCAGAATGACACCTCGGGGAAT 140501 Score = 118 bits (130), Expect = 1e-21 Identities = 337/512 (66%), Gaps = 25/512 (5%) Strand=Plus/Minus Query 15864 GGGAGAGCTACTTGGATCTTACGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGG 15923 |||||| | || || ||| ||||| || ||||| || ||||| | || | ||| ||| Sbjct 143398 GGGAGATCGACAGTGACCTTTCGATCGAAACGACCAGGTCGAAGCAAAGCTTGATCRAGG 143339 Query 15924 ATATCAACGCGATTCGTTGCGGCGATGACAACAATACCTGTTTCGTTA---TCAAAACCA 15980 ||||| | ||||| || ||||| ||| || ||| || | |||| ||||||||| Sbjct 143338 ATATCGATACGATTGGTGGCGGCAATGGTAATAATTCCKGG---GTTACCGTCAAAACCA 143282 Query 15981 TCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATAC-- 16038 |||||||| | | ||||||||| |||||||| ||||| ||||| || | | | Sbjct 143281 TCCATCTCAACAAGGATCTGGTTAATTGTTTGTTCACGTTCGTCATTACCT--CCTCCTT 143224 Query 16039 CACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGC-ATGGT 16097 ||| | | ||||| || ||||||||||| ||||| ||||||| |||| | || Sbjct 143223 GGCCACCTCCACGTTGGCGACCGACGGCATCAATTTCATCGATGAAGATAATGCAAGGGG 143164 Query 16098 TGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAAC 16157 | | ||| | || | | || | ||| || || || ||| || ||||| || ||| Sbjct 143163 CGTTCTTCTTG-GCTTGTCCGAAAATATCACGGACTCGAGAGGCTCCAACACCGACGAAC 143105 Query 16158 ATCTCCACAAAGTTTGCGGCGGAA-CATTG-----GATGAAGGGGACATTAGATTCACCC 16211 ||||| || || | | ||| || || |||||| || ||| | || || Sbjct 143104 ATCTCAACGAATT------CAGAACCACTGATGGAGATGAACGGAACACCCGCCTCTCCA 143051 Query 16212 GCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCT 16271 |||| || |||||| || |||||||| || || || || | |||| |||| Sbjct 143050 GCAACAGCCTTGGCGAGGAGGGTCTTACCGGTTCCAGGAGGTCCGTCAAGGATAACACCA 142991 Query 16272 CGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAATC 16331 || || || | ||| | ||| ||||||||||| | ||||| || | | Sbjct 142990 CGGGGGATACGGCAGCCGTTCTTGGTGTAGGCTTCAGGTTGCTTCAARAAATCGACGACC 142931 Query 16332 TCTTCCAATTCATCTTTGGCGGCGTCA-ATCC 16362 || |||||||| || || ||||| |||| Sbjct 142930 TCAGCCAATTCAAGCTTTGCTCCGTCACATCC 142899 >seq110 Length=137954 Score = 129 bits (142), Expect = 7e-25 Identities = 126/160 (79%), Gaps = 2/160 (1%) Strand=Plus/Plus Query 102173 CTTTGCTGAGCGACTCTTCGCATTT-GCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCT 102231 |||||| ||||| | |||| ||| |||| || ||||| ||||| ||||| || || Sbjct 11311 CTTTGCGGAGCGGTGCGTCGCCTTTTGCGTC-GTGGAGGGAATCTTTTTCTCGGGGAGCT 11369 Query 102232 TCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACG 102291 ||||||| || | ||||||||||||||| || |||||||| || || ||| ||||||| Sbjct 11370 TCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGCCTGGCCTTTTCCAACG 11429 Query 102292 AGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331 |||| ||||| || ||||||||||||||| || ||||| Sbjct 11430 AGCTCATCTCGCGCGACGAGGGACTCCACTGCGACTTTGC 11469 >seq108 Length=147947 Score = 118 bits (130), Expect = 1e-21 Identities = 456/707 (64%), Gaps = 17/707 (2%) Strand=Plus/Plus Query 111545 TTATTTTGGTCTCAAGACCCTCGAGAAAAGCTACCTCCAAAGACTGGATGGTGTCTTGAT 111604 ||| |||||| | || ||||||||||| |||| | | | || |||| | ||| Sbjct 12373 TTACTTTGGTTTTAAAACCCTCGAGAAGTCCTACTTGCTYAAGCTCAATGG---CAAGAT 12429 Query 111605 GGAA--ACC-CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATAT 111661 | | || ||||||| |||||| ||||| ||||| | || || || || || ||||| Sbjct 12430 CGCAGAACGACCACAGTGCATGTTGATGCGCGTCGCCGTTGGAATTCACGGAGATGATAT 12489 Query 111662 TGATTCTGTTTTGGAGACATACGACAAGATGTCCCGT---GGTATGTTCATCCACGCAAC 111718 || || |||||||| || | || || || | || |||| ||| || || Sbjct 12490 CGAGCGGGTCTTGGAGACCTATAA--AGGCCTCTCGGAACGATAC-TTCACCCATGCCAC 12546 Query 111719 ACCAACCCTCTTCAACGCTGGTA-CACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTG 111777 ||| |||||||||||||| || | || ||| || || |||||| |||||| || | Sbjct 12547 ACCGACCCTCTTCAACGCCGGAACCAACAA-CCCTCAGATGTCCTCTTGTTTTCTGTTGA 12605 Query 111778 CAAACAAGGAGGATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCT 111837 ||| ||||| || || ||| ||||||| |||| ||| |||| || ||| || | Sbjct 12606 CAATGAAGGAAGACTCCATCGATGGCATCTACGACACACTCAAGAGCTGCGCCGTGATTT 12665 Query 111838 CAAAGTGGGCTGGTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTA 111897 | |||| || ||||| || || || | ||| | | | |||| || || | Sbjct 12666 CGAAGTACGCAGGTGGAATTGGTCTGGCAACCCACAACATTCGTGCCAGTAAATCCTACA 12725 Query 111898 TTAGAGGTACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCA 111957 || | || || || ||| ||| |||| || | || ||| | || || || ||| || Sbjct 12726 TTCGTGGAACCAACGGTACATCCAATGGCATCGTCCCCATGTTGCGTGTCTTCAACAACA 12785 Query 111958 CAGCGCGCTATGTAAACCAAGCTG--GGC-GTCGCAAGGGATCTATCGCAGTCTATCTTG 112014 | || | || || | || | || ||| ||||||||| || || | || | | Sbjct 12786 CCGCCMGATACGTCGATCAGGGTGGAGGCAAGCGCAAGGGAAGCATTGCCATTTACTTGG 12845 Query 112015 AGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGG 112074 |||| |||||||| |||||| | | || | || | || ||||| || | || | Sbjct 12846 AGCCCTGGCACGCAGATATCTTTGCCTTTTTAGATCTTCGCAAAAACCACGGGAACGAAG 12905 Query 112075 AGGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAG 112134 | || || ||| | || | | |||||||||| || || || |||||| | | | Sbjct 12906 CCGATCGCGCACGTGATTTGTTTTACTCTCTCTGGATCCCTGACCTGTTCATGGAACGTG 12965 Query 112135 TTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATG 112194 | ||| | || | ||| | | | ||||| ||| || ||||||||| ||||| Sbjct 12966 TCAAGGCCAACGGGACATGGACGTTGATGTGTCCCGACGAGTGCCCCGGTCTCCCCGATT 13025 Query 112195 CCGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAA 112241 | || | ||||| | | | ||| |||||||||| ||||| Sbjct 13026 GCCACGGACARGAGTTCAAGGAATTGTACGAAAAGTACGAGAAAGAA 13072 >seq552 Length=20293 Score = 93.3 bits (102), Expect = 5e-14 Identities = 254/377 (67%), Gaps = 19/377 (5%) Strand=Plus/Plus Query 15884 ACGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGC 15943 ||| || |||||||| || ||| | || | ||| | || ||||| ||||| || | Sbjct 17208 ACGGTCGAAGCGACCAGGTCGAGTTAAAGCCTGATCTAAAATGTCAACACGATTGGTACC 17267 Query 15944 GGCGATGACAACAATACCTGTTTCGTTATC--AAAACCATCCATCTCTGTCAA-AAGCTG 16000 || | || |||| ||| || |||| |||||||||||| || | ||| |||||| Sbjct 17268 AGCCAAAACCACAACACCGGT--CGTTGGGCTAAAACCATCCATTTC-GACAAGAAGCTG 17324 Query 16001 GTTAATAGTTTGTTCCCGTTCATCATT--CGCTGGCATA-CCACCAGCACTGCGTTGCTT 16057 || | || | ||||||||| ||||| ||| | | | |||||| || || || Sbjct 17325 ATTGAGTGTATTTTCCCGTTCGTCATTTCCGCCCGAAAAACCACCACGACCACGCTGGCG 17384 Query 16058 TCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTC 16117 || |||||||| || ||||| ||||| | ||||| || ||| | ||||| ||| Sbjct 17385 ACCAACGGCATCGATTTCATCTATGAAAATTATGCAGGGCGTATTGGCTCGAGCCTCTTT 17444 Query 16118 AAAGAGATCCCGTACACGCTTGGCG--CCCACACCAACAAACATCTCCACAAAGTTTGCG 16175 || ||||| || ||| |||| | || || ||||||||||| || | || | || | Sbjct 17445 GAAAAGATCTCG--CACCCTTGAGGGTCCAACTCCAACAAACATTTCAATGAAATCTGAG 17502 Query 16176 GCGGAAC--ATTGGAT-GAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGA 16232 | || || | || || || || | |||||| |||| ||| ||| || ||| Sbjct 17503 CC---ACTGATGGAATAAAAAGGAACCCCGGCTTCACCAGCAACTGCTTTGGCTAGGAGA 17559 Query 16233 GTCTTACCCGTACCTGG 16249 ||||| || ||||| || Sbjct 17560 GTCTTGCCTGTACCAGG 17576 >seq137 Length=130264 Score = 86.0 bits (94), Expect = 8e-12 Identities = 152/222 (68%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 15884 ACGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGC 15943 ||| ||||| ||||| || || || || | || || || || |||||||| || | Sbjct 127205 ACGGTCAAATCGACCGGGACGCGTTAGGGCTTGGTCCAGAATGTCCACGCGATTTGTGCC 127146 Query 15944 GGCGATGACAACAATACCTGTTTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGGTT 16003 ||| | |||||||| ||| ||| |||| || |||||||||||| | | || || Sbjct 127145 GGCCAAGACAACAACACCACTTTTTGTATCGAATCCATCCATCTCTACTAGCATTTGATT 127086 Query 16004 AATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCTTTCCCAC 16063 | ||| | ||| |||||||| || || | || ||| | ||||| || || Sbjct 127085 TAGAGTGTTTTCACGTTCATCGTTTCCTCCAACCCCGCCACGCCCACGTTGGCGACCAAC 127026 Query 16064 GGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTC 16105 ||||| |||||||| ||||||| ||||| ||| ||| || Sbjct 127025 AGCATCTATCTCATCGATGAAGATAATGCACGGTGAATTCTC 126984 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620733872551280