Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq108 201 1e-46 seq39 149 7e-31 seq552 107 2e-18 seq110 100 3e-16 seq2 84.2 3e-11 >seq108 Length=147947 Score = 201 bits (222), Expect = 1e-46 Identities = 740/1146 (65%), Gaps = 49/1146 (4%) Strand=Plus/Minus Query 110102 CATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTAGAGCGTCGAG 110161 |||| || | ||||||||||| |||||||| || || ||||||||||| ||| | | Sbjct 13487 CATCTGCCAATCCCTGAACACCAAGACCAATTGGACGGTGCTTCATGTTCGAGTATTTGG 13428 Query 110162 CAGTTTCT---ACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTCGTCACAG 110218 | ||| | ||||| || |||||||||||||| | ||| || || | |||| | Sbjct 13427 C---TTCGGGAATAGGGTAGAAATTGCGGTCGATGACTCTATTCAGGTTTCTGGTCAAAA 13371 Query 110219 TCTTCGTGATTTCATGGAGTTTGTCGTAATCGAACGTTTTCGTCTCCTTATTG------- 110271 || ||| | | | || || ||| | ||||| | | | || ||| Sbjct 13370 TCATCGCAACCTGTCGAAGCTTTTCGAAGTCGAAAATGAGTGGGCCATTGTTGGTGAGAG 13311 Query 110272 -----ACATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGT 110326 || | |||| |||| || ||||| ||||| || | ||| || ||| Sbjct 13310 GTCGTACCAACTTGGAGAGACTGATGCTGGCAAGGTTGCAAACGGCAGTTTCCTCTGGAG 13251 Query 110327 CGGTGTATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCT 110386 ||||| | | ||| || ||||| | ||| |||| |||| |||||||| | | Sbjct 13250 AAGTGTACTGAACAATCTCGGTACATAGGTTCGAACAACGAATGGTTCCCAAGTTTTGTT 13191 Query 110387 GATTCGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCT 110446 ||||||| ||| |||||| |||||| || | |||||| ||||| || ||||| || Sbjct 13190 GATTCGACTTGTTGTTGCAGTGATCCTTGTACACCATGTAAGGGGTTCCTGTTTCGACCT 13131 Query 110447 GTGACTTGAGAATGGCCTTCCATACAT-CGGCGGCGGGGACAGTTGCGTTAGCGAGAC-- 110503 | || | | || || ||| | | | ||| | | | ||| || |||| | Sbjct 13130 GCGAGTCCAAGATTGCGAACCAGAGCTGCTGCGCCTG----AATTGT-TTGGCGACCCTT 13076 Query 110504 --CTTCCTCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAG 110561 |||| | ||||||||| |||||| |||| || || ||||||| ||| | || Sbjct 13075 GCCTTCTTTCTCGTACTTTTCGTACAATTCCTTGAACTCYTGTCCGTGGCAATCGGGGAG 13016 Query 110562 ACCCTTCGCCTTGTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCAT 110621 ||| || ||||||||| | | | ||| | || ||| || | | ||| Sbjct 13015 ACCGGGGCACTCGTCGGGACACATCAACGTCCATGTCCCGTTGGCCTTGACACGTTCCAT 12956 Query 110622 GAACAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACC 110681 |||||||||||| ||||| | | | || | ||||| ||| | |||| | || Sbjct 12955 GAACAGGTCAGGGATCCAGAGAGAGTAAAACAAATCACGTGCGCGATCGGCTTCGTTCCC 12896 Query 110682 TTGGTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGAC 110741 ||||| ||| || || |||||| | | |||||| | |||||| || || | || | Sbjct 12895 GTGGTTTTTGCGAAGATCTAAAAAGGCAAAGATATCTGCGTGCCAGGGCTCCAAGTAAAT 12836 Query 110742 AGCGATGGATCCCTTACGA---CGACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAA 110798 || ||| |||||| || | || |||| | || || | || ||| ||||| Sbjct 12835 GGCAATGCTTCCCTTGCGCTTGCCTCCACCCTGATCGACGTATCKGGCGGTGTTGTTGAA 12776 Query 110799 GACCCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTT 110858 ||| | | ||| || | || |||| |||| ||| || || || | ||| ||| || Sbjct 12775 GACACGCAACATGGGGACGATGCCATTGGATGTACCGTTGGTTCCACGAATGTAGGATTT 12716 Query 110859 ATTGGCACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGTGC 110918 | |||||||||||| |||| | || |||||| ||||| || |||| ||| || Sbjct 12715 ACTGGCACGAATGTTGTGGGTTGCCAGACCAATTCCACCTGCGTACTTCGAAATCACGGC 12656 Query 110919 ACA-CTCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTG-TTGGCAATTAGA 110976 || |||| ||||||| | || || ||||| || || ||| |||| ||| ||| ||| Sbjct 12655 GCAGCTCT-TGAGTGTGTCGTAGATGCCATCGATGGAGTCTTCCTTCATTGTCAAC-AGA 12598 Query 110977 AAGCAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGA 111036 || ||||| ||||||||||| ||||| || |||||||| || ||||| ||||| Sbjct 12597 AAACAAGAGGACATCTGAGGGTTGTTGGTTCCGGCGTTGAAGAGGGTCGGTGTGGCATGG 12538 Query 111037 ATGAACAGACCTTGGGACATCTTGTTGTATGTGT-CGAGTGCGGAGGGTACATCTTTACC 111095 |||| | || || | || || || | | || | | | | ||| | || Sbjct 12537 GTGAAGTATCGTTCCGAGAGGCCTTTATAGGTCTCCAAGACCCGCTCG-ATATCATCTCC 12479 Query 111096 GTGAATACCAATGGCAACTCGCATGAACATATATTGAGG-CGT--TTCGATTAGCTTTCC 111152 |||||| |||| ||| || ||||| ||||| | || || ||| | |||| ||| || Sbjct 12478 GTGAATTCCAACGGCGACGCGCATCAACATGCACTGTGGTCGTTCTGCGAT---CTTGCC 12422 Query 111153 ATCAACACGCTGAAG---GTAACTCTTCTCTAGGGTCTTGAGACCAAAGTATCCAAAATC 111209 || | ||| || ||| |||||| ||||| || | ||||||||| | | || Sbjct 12421 ATTGA---GCTTRAGCAAGTAGGACTTCTCGAGGGTTTTAAAACCAAAGTAATCGTACTC 12365 Query 111210 GAAATC 111215 |||||| Sbjct 12364 GAAATC 12359 >seq39 Length=234218 Score = 149 bits (164), Expect = 7e-31 Identities = 280/410 (68%), Gaps = 22/410 (5%) Strand=Plus/Minus Query 11499 CTTACGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGT 11558 ||| |||||||||||||| || || || | ||| | ||| || ||||||| ||| || || Sbjct 143381 CTTTCGATCGAAACGACCAGGTCGAAGCAAAGCTTGATCRAGGATATCGATACGATTGGT 143322 Query 11559 AGCGGCAATGACTACAATGCCAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAGCTG 11618 ||||||||| | ||| || | | | ||| ||||| ||||| || || | ||| Sbjct 143321 GGCGGCAATGGTAATAATTCCKGGGTTACCGTCAAAACCATCCATCTCAACAAGGATCTG 143262 Query 11619 GTTGATCGTCTGTTCACGCTCATCGTTGGAGGGCATAC-----CACCTGCCGAACGCTTC 11673 ||| || || |||||||| || || || | | | | ||||| | ||| | Sbjct 143261 GTTAATTGTTTGTTCACGTTCGTCATT--ACCTCCTCCTTGGCCACCTCC---ACGTTGG 143207 Query 11674 TTACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGT 11733 |||||| || ||||| ||||||||||| | || || || ||| || ||| Sbjct 143206 CGACCGACGGCATCAATTTCATCGATGAAGATAATGCAAGGGGCGTTCTTCTTGGCTTGT 143147 Query 11734 TCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCG 11793 |||||| ||||| || || ||||||||||| ||||||||||||||||| | Sbjct 143146 CCGAAAATATCACGGACTCGAGAGGCTCCAACACCGACGAACATCTCAACGAATT----- 143092 Query 11794 GCAGAA-CACTGA-----ATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGG 11847 ||||| |||||| ||||| |||||| | ||| ||||| | || |||||| Sbjct 143091 -CAGAACCACTGATGGAGATGAACGGAACACCCGCCTCTCCAGCAACAGCCTTGGCGAGG 143033 Query 11848 AGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGAT 11897 || |||||||| || ||||| | || | || | | ||||||||||| Sbjct 143032 AGGGTCTTACCGGTTCCAGGAGGTCCGTCAAGGATAACACCACGGGGGAT 142983 Score = 96.9 bits (106), Expect = 4e-15 Identities = 266/404 (66%), Gaps = 10/404 (2%) Strand=Plus/Plus Query 11499 CTTACGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGT 11558 ||| ||||| || || || || || | ||||| | ||| | ||| ||||||||||| || Sbjct 140103 CTTMCGATCAAATCGTCCGGGACGCAAGAGAGCTTGATCCAAAATGTCGACACGGTTGGT 140162 Query 11559 AGCGGCAATGACTACAATGCCAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAGCTG 11618 ||| ||||| | || || | | ||||| || ||||| || | || || Sbjct 140163 AGCAGCAATAGTGATGATACCGGGATTTCCATCGAATCCATCCATCTCCACCAAAATTTG 140222 Query 11619 GTTGATCGTCTGTTCACGCTCATCGTT--GGAGGGCATACCACCTGCCGAACGCTTCTTA 11676 || | ||||||||||| |||||||| | |||| || || || ||| | Sbjct 140223 ATTCACGGTCTGTTCACGTTCATCGTTTCCGCCGGCAAAC--CCAGCGCCACGTTGACGT 140280 Query 11677 CCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTTCG 11736 || ||||| || ||||||||||| || | || ||||| || ||| ||| | Sbjct 140281 CCAACAGCATCGATCTCATCGATAAAGATAATGCACGGAGCRTTCTTCTTTGCTTGTCCA 140340 Query 11737 AAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGCA 11796 || | || || ||||| || || ||||| || |||||||| || || | ||| | Sbjct 140341 AAGATATCGCGAACACGGGAGGCACCTACACCAACAAACATCTCCACAAACT---CGGAA 140397 Query 11797 GAAC-ACTG--AATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTC 11853 || | || |||||||| ||| || || ||||| | ||| ||| | |||||| Sbjct 140398 CCACTAATGGAGATGAAGGGGACACCAGCTTCTCCAGCAACTGCTTTAGCCAAAAGAGTC 140457 Query 11854 TTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGAT 11897 ||||| ||||| || | ||| | |||| | | || ||||| || Sbjct 140458 TTACCAGTACCGGGAGGTCCATCCAGAATGACACCTCGGGGAAT 140501 >seq552 Length=20293 Score = 107 bits (118), Expect = 2e-18 Identities = 310/470 (66%), Gaps = 13/470 (3%) Strand=Plus/Plus Query 11445 ATGAACACCCAAAATCTTCCTGCGTCCTTGAACACTGGGGAGAGTCACCTGAATCTTACG 11504 |||||| || ||||| | |||| || || | | ||| || ||| ||| | ||| Sbjct 17151 ATGAACGCCAAAAATTTCTTTGCGACCCTGGAGATCGGGACGATCAACCGTAATTTGACG 17210 Query 11505 ATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCGGC 11564 ||||| ||||| || || || ||| | ||| | ||| || ||||| || ||| | || Sbjct 17211 GTCGAAGCGACCAGGTCGAGTTAAAGCCTGATCTAAAATGTCAACACGATTGGTACCAGC 17270 Query 11565 AATGACTACAATGCCAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTGAT 11624 | || |||| || ||| | ||||| |||||||| |||||||| |||| Sbjct 17271 CAAAACCACAACACCGGTCGTTGGGCTAAAACCATCCATTTCGACAAGAAGCTGATTGAG 17330 Query 11625 CGTCTGTTCACGCTCATCGTTGGAGGGC---ATACCACCTGCCGA--ACGCTTCTTACCG 11679 || | ||| || || || || | | | |||||| ||| ||||| ||| Sbjct 17331 TGTATTTTCCCGTTCGTCATTTCCGCCCGAAAAACCACCA--CGACCACGCTGGCGACCA 17388 Query 11680 ACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTTCGAAA 11739 || || || || ||||| ||||| | || || || ||||| || |||| || |||| Sbjct 17389 ACGGCATCGATTTCATCTATGAAAATTATGCAGGGCGTATTGGCTCGAGCCTCTTTGAAA 17448 Query 11740 AGTTCACGTACACGCTTC--GCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGCAG 11797 || || || ||| ||| | |||||| || || ||||| |||| ||| | || | || Sbjct 17449 AGATCTCG--CACCCTTGAGGGTCCAACTCCAACAAACATTTCAATGAAATCTGAGCCAC 17506 Query 11798 AACACTGAATGAAG-GGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTA 11856 | |||| || ||||| | |||||||| | ||| || ||||||||||| Sbjct 17507 TG-ATGGAATAAAAAGGAACCCCGGCTTCACCAGCAACTGCTTTGGCTAGGAGAGTCTTG 17565 Query 11857 CCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACC 11906 || |||||||||| ||| ||| ||||| || || | |||||||| Sbjct 17566 CCTGTACCAGGTGGTCCACAGAGTAGGGCTCCCTTTGGCGTTTTGGCACC 17615 >seq110 Length=137954 Score = 100 bits (110), Expect = 3e-16 Identities = 206/302 (68%), Gaps = 7/302 (2%) Strand=Plus/Minus Query 119495 GGCAAATTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCC 119554 |||||| || || || || || || || ||||||||||| || ||| || || Sbjct 11470 GGCAAAGTCGCAGTGGAGTCCCTCGTCGCGCGAGATGAGCTCGTTGGAAAAGGCCAGGCC 11411 Query 119555 AGGCATGAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGAT 119614 |||||||| || | ||||| |||||||||||||| || || || || || || ||||| Sbjct 11410 GGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCGCAGAAGCTCCCCGAGAAAAAGAT 11351 Query 119615 GCCCTCCACACAGGCGAAA-GCGAATAGACGCTCAGCAAAAGGTCGAGA----CTTGTCG 119669 |||||||| | || ||| |||| ||||| || |||| | | | | |||| Sbjct 11350 TCCCTCCAC-GACGCAAAAGGCGACGCACCGCTCCGC-AAAGCTGGCCATTCCCGAGTCG 11293 Query 119670 AACCACTTGAGAGCCCAGTTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGCTTCG 119729 |||||| ||| |||||| |||||| | | ||||||||| || | |||||| | | Sbjct 11292 CACCACTGGAGGGCCCAGCGGGCCTTTTTCCGCACGCAGGGGACCGTGTCGATGGCGTGG 11233 Query 119730 AAAAGTTGCTTCTTTTCAGCACCATCCTTAATATATTTATCAATGAGTTTAGAGTAGGTC 119789 | || | ||| || | |||||| || || | || ||||| ||||||||| Sbjct 11232 AGGAGACGGAGCTTCTCCTCGGAATCCTTGATGTACGTGTCGATGAGGAGCGAGTAGGTC 11173 Query 119790 TC 119791 || Sbjct 11172 TC 11171 >seq2 Length=515016 Score = 84.2 bits (92), Expect = 3e-11 Identities = 164/240 (68%), Gaps = 2/240 (1%) Strand=Plus/Plus Query 167561 TACCAAATTGACCACATGGCTCGAGAAGATTGATGTTATTCGACCCCGTATAATCGTTG- 167619 |||| |||||||| | || | ||||||||||| ||||| ||| | ||| || Sbjct 46128 TACCGAATTGACCTGAAGGTGTCAATAGATTGATGTTGTTCGAACCCACA-AATGACTGT 46186 Query 167620 GCCAACTTGACGATCGTTTCAGCGAGGGAAACTTCGCCGTGGTGGTAAGCACTCTTTTCA 167679 |||| |||| |||||| || || ||||||||||||| ||||| ||||| Sbjct 46187 GCCATATTGATAATCGTTGTGTGAAGCGATGCTTCGCCGTGGTGATAAGCCGAATTTTCT 46246 Query 167680 GCCACATATGCTGCCAACTGTGCAACCTTCATCTCATCTTTGAGATTCTTTTGGAAACAT 167739 | | ||| | || | || || ||||| || ||||||||||| || || || || Sbjct 46247 CCGATATACCCCGCAAGTTGAGCTACCTTGATTTCATCTTTGAGTTTTCGTTTAAAGCAA 46306 Query 167740 GAATACATAACCTTGCGTTGAGAAGGTTTGAGACCATCTGCCACGTGAGCAATTGAGCGC 167799 || | | ||||||||||| |||||||||| || || | ||| | |||||| ||| Sbjct 46307 GAGAATAATACCTTGCGTTGCGAAGGTTTGAAGCCGTCCATAATGTGGGGAATTGAACGC 46366 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588967908942200