Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq39 156 5e-33 seq108 147 3e-30 seq137 98.7 1e-15 >seq39 Length=234218 Score = 156 bits (172), Expect = 5e-33 Identities = 266/382 (70%), Gaps = 20/382 (5%) Strand=Plus/Plus Query 9185 GATCTTACGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATT 9244 || ||| |||||||| || || ||||| | ||| || | ||| | || || || || || Sbjct 140100 GACCTTMCGATCAAATCGTCCGGGACGCAAGAGAGCTTGATCCAAAATGTCGACACGGTT 140159 Query 9245 CGTCGCGGCGATGACAACAATACCTG--TTTCATTATCAAAACCATCCATCTCTGTCAAA 9302 || || || || | ||||| | |||| ||| || ||||||||||| |||| Sbjct 140160 GGTAGCAGCAATAGTGATGATACCGGGATTTCC--ATCGAATCCATCCATCTCCACCAAA 140217 Query 9303 AGTTGGTTAATAGTTTGTTCCCGTTCATCATT--CGCTGGCATACCACCAGCACTGCGTT 9360 | ||| || | || ||||| |||||||| || ||| |||| ||| |||| | |||| Sbjct 140218 ATTTGATTCACGGTCTGTTCACGTTCATCGTTTCCGCCGGCAAACC--CAGCGCCACGTT 140275 Query 9361 GCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGA 9420 | ||| || ||||| |||||||| || |||| ||| || || || | || Sbjct 140276 GACGTCCAACAGCATCGATCTCATCGATAAAGATAATGCACGGAGCRTTCTTCTTTGCTT 140335 Query 9421 TTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTG 9480 | |||||| ||||||||| | ||| || ||||||||||||||||||||||| | Sbjct 140336 GTCCAAAGATATCGCGAACACGGGAGGCACCTACACCAACAAACATCTCCACAAACT--- 140392 Query 9481 CGGCGGAAC----ATTG--GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGA 9534 |||||| | || ||||||||||||| || ||| || |||| ||| || | Sbjct 140393 ---CGGAACCACTAATGGAGATGAAGGGGACACCAGCTTCTCCAGCAACTGCTTTAGCCA 140449 Query 9535 GAAGAGTCTTACCCGTACCTGG 9556 |||||||||||| ||||| || Sbjct 140450 AAAGAGTCTTACCAGTACCGGG 140471 Score = 113 bits (124), Expect = 5e-20 Identities = 331/508 (65%), Gaps = 17/508 (3%) Strand=Plus/Minus Query 9171 GGGAGAGCTACTTGGATCTTACGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGG 9230 |||||| | || || ||| ||||| || ||||| || ||||| | || | ||| ||| Sbjct 143398 GGGAGATCGACAGTGACCTTTCGATCGAAACGACCAGGTCGAAGCAAAGCTTGATCRAGG 143339 Query 9231 ATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAAACCATCC 9290 ||||| | ||||| || ||||| ||| || ||| || | | | |||||||||||| Sbjct 143338 ATATCGATACGATTGGTGGCGGCAATGGTAATAATTCCKGGGTTACCGTCAAAACCATCC 143279 Query 9291 ATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATAC--CAC 9348 ||||| | | |||||||| |||||||| ||||| ||||| || | | | | Sbjct 143278 ATCTCAACAAGGATCTGGTTAATTGTTTGTTCACGTTCGTCATTACCT--CCTCCTTGGC 143221 Query 9349 CAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACATGGTTGAT 9408 || | | ||||| || ||||||||||| ||||| ||||||| ||| || || | Sbjct 143220 CACCTCCACGTTGGCGACCGACGGCATCAATTTCATCGATGAAGATAATGCAAGGGGCGT 143161 Query 9409 TTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCT 9468 | | ||| | | || | ||| || || | ||| || ||||| || ||||||| Sbjct 143160 TCTTCTTGGCTTGTCCGAAAATATCACGGACTCGAGAGGCTCCAACACCGACGAACATCT 143101 Query 9469 CCACAAAGTTTGCGGCGGAA-CATTG-----GATGAAGGGGACATTAGATTCACCCGCAA 9522 | || || | | ||| || || |||||| || ||| | || || |||| Sbjct 143100 CAACGAATT------CAGAACCACTGATGGAGATGAACGGAACACCCGCCTCTCCAGCAA 143047 Query 9523 TGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCCCGTG 9582 || |||||| || |||||||| || || || || | |||| |||| || | Sbjct 143046 CAGCCTTGGCGAGGAGGGTCTTACCGGTTCCAGGAGGTCCGTCAAGGATAACACCACGGG 142987 Query 9583 GAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTGAGAAAATCCACAATCTCTT 9642 | || | ||| | ||| ||||||||||| | ||||| || | ||| Sbjct 142986 GGATACGGCAGCCGTTCTTGGTGTAGGCTTCAGGTTGCTTCAARAAATCGACGACCTCAG 142927 Query 9643 CCAATTCATCTTTGGCGGCGTCA-ATCC 9669 |||||||| || || ||||| |||| Sbjct 142926 CCAATTCAAGCTTTGCTCCGTCACATCC 142899 >seq108 Length=147947 Score = 147 bits (162), Expect = 3e-30 Identities = 583/909 (64%), Gaps = 15/909 (2%) Strand=Plus/Minus Query 106478 TTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAA 106537 |||||||| || || || || | ||||||| | ||| || ||||| | ||| ||| Sbjct 13275 TTGCAAACGGCAGTTTCCTCTGGAGAAGTGTACTGAACAATCTCGGTACATAGGTTCGAA 13216 Query 106538 CTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGC 106597 | ||| || ||||| || | ||| || ||| |||||||| ||||||||| | | Sbjct 13215 CAACGAATGGTTCCCAAGTTTTGTTGATTCGACTTGTTGTTGCAGTGATCCTTGTACACC 13156 Query 106598 ATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACACAT-CGGCGGC 106656 ||||| || || || || || ||| || | | ||||| ||| | | | ||| | Sbjct 13155 ATGTAAGGGGTTCCTGTTTCGACCTGCGAGTCCAAGATTGCGAACCAGAGCTGCTGCGCC 13096 Query 106657 TGGTACAATGGCGTTGGC---CCGTCCCTCCGC-CTCGTACTTTGTGTAGAGGGCTTCAA 106712 || ||| | ||||| || | ||| | |||||||||| ||| | | | | Sbjct 13095 TG----AATTGT-TTGGCGACCCTTGCCTTCTTTCTCGTACTTTTCGTACAATTCCTTGA 13041 Query 106713 ACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATT 106772 |||| | || |||| |||||| || || ||| ||||| | | | |||| Sbjct 13040 ACTCYTGTCCGTGGCAATCGGGGAGACCGGGGCACTCGTCGGGACACATCAACGTCCATG 12981 Query 106773 GACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGAT 106832 || ||| || || | |||||| ||||| || ||||| || || |||| | || Sbjct 12980 TCCCGTTGGCCTTGACACGTTCCATGAACAGGTCAGGGATCCAGAGAGAGTAAAACAAAT 12921 Query 106833 CTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATAT 106892 | | ||| | |||||| || ||||| || | || | || | | ||||| Sbjct 12920 CACGTGCGCGATCGGCTTCGTTCCCGTGGTTTTTGCGAAGATCTAAAAAGGCAAAGATAT 12861 Query 106893 CCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGAC-GCC--CAGCTTGAT 106949 | |||||||| ||||| | || | || || |||||| || ||| || | |||| Sbjct 12860 CTGCGTGCCAGGGCTCCAAGTAAATGGCAATGCTTCCCTTGCGCTTGCCTCCACCCTGAT 12801 Query 106950 TTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGAC 107009 || || | || ||| ||| || || || | ||| || | || |||| ||| || Sbjct 12800 CGACGTATCKGGCGGTGTTGTTGAAGACACGCAACATGGGGACGATGCCATTGGATGTAC 12741 Query 107010 CATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATAC 107069 | || || || ||||| |||||| |||| | | | ||| | || ||||| | Sbjct 12740 CGTTGGTTCCACGAATGTAGGATTTACTGGCACGAATGTTGTGGGTTGCCAGACCAATTC 12681 Query 107070 CCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTG 107129 | || || |||| || || || || | | || || | ||||| || | ||| | Sbjct 12680 CACCTGCGTACTTCGAAATCACGGCGCAGCTCTTGAGTGTGTCGTAGATGCCATCGATGG 12621 Query 107130 AGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTG-TACCAGCA 107188 |||| ||||| | | | || || ||| ||||||||| || ||| || | || || Sbjct 12620 AGTCTTCCTTCATTGTCAACAGAAAACAAGAGGACATCTGAGGG-TTGTTGGTTCCGGCG 12562 Query 107189 TTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGACATCTTGTCGTATGTCTCC 107248 ||||||||||| ||||| || || |||| | || || | | || |||||| Sbjct 12561 TTGAAGAGGGTCGGTGTGGCATGGGTGAAGTATCGTTCCGAGAGGCCTTTATAGGTCTCC 12502 Query 107249 AAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAAACATGTATTGG 107308 ||||| || || || || ||||| || || | ||| || ||||| |||||| | || Sbjct 12501 AAGACCCGCTCGATATCATCTCCGTGAATTCCAACGGCGACGCGCATCAACATGCACTGT 12442 Query 107309 GGTGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATAGCTCTTCTCAAGGGTTTTGAGA 107368 ||| ||| || |||||| |||| | | ||| |||||| |||||||| | | Sbjct 12441 GGTCGTTCTGCGATCTTGCCATTGAGCTTRAGCAAGTAGGACTTCTCGAGGGTTTTAAAA 12382 Query 107369 CCAAAGTAA 107377 ||||||||| Sbjct 12381 CCAAAGTAA 12373 >seq137 Length=130264 Score = 98.7 bits (108), Expect = 1e-15 Identities = 189/279 (68%), Gaps = 0/279 (0%) Strand=Plus/Minus Query 9191 ACGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGC 9250 ||| ||||| ||||| ||||| || || | || || || || |||||||| || | Sbjct 127205 ACGGTCAAATCGACCGGGACGCGTTAGGGCTTGGTCCAGAATGTCCACGCGATTTGTGCC 127146 Query 9251 GGCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTT 9310 ||| | |||||||| ||| ||| |||| || |||||||||||| | | ||| || Sbjct 127145 GGCCAAGACAACAACACCACTTTTTGTATCGAATCCATCCATCTCTACTAGCATTTGATT 127086 Query 9311 AATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCTTTCCCAC 9370 | ||| | ||| |||||||| || || | || ||| | ||||| || || Sbjct 127085 TAGAGTGTTTTCACGTTCATCGTTTCCTCCAACCCCGCCACGCCCACGTTGGCGACCAAC 127026 Query 9371 GGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAG 9430 ||||| |||||||| ||||||| ||| || ||| ||| || | || | || | Sbjct 127025 AGCATCTATCTCATCGATGAAGATAATGCACGGTGAATTCTCTCTTGCCTCCTTGAATAA 126966 Query 9431 ATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTC 9469 |||||||| | | | || ||||| |||||||| || Sbjct 126965 GTCGCGAACTCGTGATGGTCCAACACCCACAAACATTTC 126927 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589972695138760