Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudo-
nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters
Query= NC_014789.1
Length=184409
Score E
Sequences producing significant alignments: (Bits) Value
seq39 156 5e-33
seq108 147 3e-30
seq137 98.7 1e-15
>seq39
Length=234218
Score = 156 bits (172), Expect = 5e-33
Identities = 266/382 (70%), Gaps = 20/382 (5%)
Strand=Plus/Plus
Query 9185 GATCTTACGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATT 9244
|| ||| |||||||| || || ||||| | ||| || | ||| | || || || || ||
Sbjct 140100 GACCTTMCGATCAAATCGTCCGGGACGCAAGAGAGCTTGATCCAAAATGTCGACACGGTT 140159
Query 9245 CGTCGCGGCGATGACAACAATACCTG--TTTCATTATCAAAACCATCCATCTCTGTCAAA 9302
|| || || || | ||||| | |||| ||| || ||||||||||| ||||
Sbjct 140160 GGTAGCAGCAATAGTGATGATACCGGGATTTCC--ATCGAATCCATCCATCTCCACCAAA 140217
Query 9303 AGTTGGTTAATAGTTTGTTCCCGTTCATCATT--CGCTGGCATACCACCAGCACTGCGTT 9360
| ||| || | || ||||| |||||||| || ||| |||| ||| |||| | ||||
Sbjct 140218 ATTTGATTCACGGTCTGTTCACGTTCATCGTTTCCGCCGGCAAACC--CAGCGCCACGTT 140275
Query 9361 GCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGA 9420
| ||| || ||||| |||||||| || |||| ||| || || || | ||
Sbjct 140276 GACGTCCAACAGCATCGATCTCATCGATAAAGATAATGCACGGAGCRTTCTTCTTTGCTT 140335
Query 9421 TTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTG 9480
| |||||| ||||||||| | ||| || ||||||||||||||||||||||| |
Sbjct 140336 GTCCAAAGATATCGCGAACACGGGAGGCACCTACACCAACAAACATCTCCACAAACT--- 140392
Query 9481 CGGCGGAAC----ATTG--GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGA 9534
|||||| | || ||||||||||||| || ||| || |||| ||| || |
Sbjct 140393 ---CGGAACCACTAATGGAGATGAAGGGGACACCAGCTTCTCCAGCAACTGCTTTAGCCA 140449
Query 9535 GAAGAGTCTTACCCGTACCTGG 9556
|||||||||||| ||||| ||
Sbjct 140450 AAAGAGTCTTACCAGTACCGGG 140471
Score = 113 bits (124), Expect = 5e-20
Identities = 331/508 (65%), Gaps = 17/508 (3%)
Strand=Plus/Minus
Query 9171 GGGAGAGCTACTTGGATCTTACGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGG 9230
|||||| | || || ||| ||||| || ||||| || ||||| | || | ||| |||
Sbjct 143398 GGGAGATCGACAGTGACCTTTCGATCGAAACGACCAGGTCGAAGCAAAGCTTGATCRAGG 143339
Query 9231 ATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAAACCATCC 9290
||||| | ||||| || ||||| ||| || ||| || | | | ||||||||||||
Sbjct 143338 ATATCGATACGATTGGTGGCGGCAATGGTAATAATTCCKGGGTTACCGTCAAAACCATCC 143279
Query 9291 ATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATAC--CAC 9348
||||| | | |||||||| |||||||| ||||| ||||| || | | | |
Sbjct 143278 ATCTCAACAAGGATCTGGTTAATTGTTTGTTCACGTTCGTCATTACCT--CCTCCTTGGC 143221
Query 9349 CAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACATGGTTGAT 9408
|| | | ||||| || ||||||||||| ||||| ||||||| ||| || || |
Sbjct 143220 CACCTCCACGTTGGCGACCGACGGCATCAATTTCATCGATGAAGATAATGCAAGGGGCGT 143161
Query 9409 TTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCT 9468
| | ||| | | || | ||| || || | ||| || ||||| || |||||||
Sbjct 143160 TCTTCTTGGCTTGTCCGAAAATATCACGGACTCGAGAGGCTCCAACACCGACGAACATCT 143101
Query 9469 CCACAAAGTTTGCGGCGGAA-CATTG-----GATGAAGGGGACATTAGATTCACCCGCAA 9522
| || || | | ||| || || |||||| || ||| | || || ||||
Sbjct 143100 CAACGAATT------CAGAACCACTGATGGAGATGAACGGAACACCCGCCTCTCCAGCAA 143047
Query 9523 TGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCCCGTG 9582
|| |||||| || |||||||| || || || || | |||| |||| || |
Sbjct 143046 CAGCCTTGGCGAGGAGGGTCTTACCGGTTCCAGGAGGTCCGTCAAGGATAACACCACGGG 142987
Query 9583 GAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTGAGAAAATCCACAATCTCTT 9642
| || | ||| | ||| ||||||||||| | ||||| || | |||
Sbjct 142986 GGATACGGCAGCCGTTCTTGGTGTAGGCTTCAGGTTGCTTCAARAAATCGACGACCTCAG 142927
Query 9643 CCAATTCATCTTTGGCGGCGTCA-ATCC 9669
|||||||| || || ||||| ||||
Sbjct 142926 CCAATTCAAGCTTTGCTCCGTCACATCC 142899
>seq108
Length=147947
Score = 147 bits (162), Expect = 3e-30
Identities = 583/909 (64%), Gaps = 15/909 (2%)
Strand=Plus/Minus
Query 106478 TTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAA 106537
|||||||| || || || || | ||||||| | ||| || ||||| | ||| |||
Sbjct 13275 TTGCAAACGGCAGTTTCCTCTGGAGAAGTGTACTGAACAATCTCGGTACATAGGTTCGAA 13216
Query 106538 CTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGC 106597
| ||| || ||||| || | ||| || ||| |||||||| ||||||||| | |
Sbjct 13215 CAACGAATGGTTCCCAAGTTTTGTTGATTCGACTTGTTGTTGCAGTGATCCTTGTACACC 13156
Query 106598 ATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACACAT-CGGCGGC 106656
||||| || || || || || ||| || | | ||||| ||| | | | ||| |
Sbjct 13155 ATGTAAGGGGTTCCTGTTTCGACCTGCGAGTCCAAGATTGCGAACCAGAGCTGCTGCGCC 13096
Query 106657 TGGTACAATGGCGTTGGC---CCGTCCCTCCGC-CTCGTACTTTGTGTAGAGGGCTTCAA 106712
|| ||| | ||||| || | ||| | |||||||||| ||| | | | |
Sbjct 13095 TG----AATTGT-TTGGCGACCCTTGCCTTCTTTCTCGTACTTTTCGTACAATTCCTTGA 13041
Query 106713 ACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATT 106772
|||| | || |||| |||||| || || ||| ||||| | | | ||||
Sbjct 13040 ACTCYTGTCCGTGGCAATCGGGGAGACCGGGGCACTCGTCGGGACACATCAACGTCCATG 12981
Query 106773 GACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGAT 106832
|| ||| || || | |||||| ||||| || ||||| || || |||| | ||
Sbjct 12980 TCCCGTTGGCCTTGACACGTTCCATGAACAGGTCAGGGATCCAGAGAGAGTAAAACAAAT 12921
Query 106833 CTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATAT 106892
| | ||| | |||||| || ||||| || | || | || | | |||||
Sbjct 12920 CACGTGCGCGATCGGCTTCGTTCCCGTGGTTTTTGCGAAGATCTAAAAAGGCAAAGATAT 12861
Query 106893 CCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGAC-GCC--CAGCTTGAT 106949
| |||||||| ||||| | || | || || |||||| || ||| || | ||||
Sbjct 12860 CTGCGTGCCAGGGCTCCAAGTAAATGGCAATGCTTCCCTTGCGCTTGCCTCCACCCTGAT 12801
Query 106950 TTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGAC 107009
|| || | || ||| ||| || || || | ||| || | || |||| ||| ||
Sbjct 12800 CGACGTATCKGGCGGTGTTGTTGAAGACACGCAACATGGGGACGATGCCATTGGATGTAC 12741
Query 107010 CATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATAC 107069
| || || || ||||| |||||| |||| | | | ||| | || ||||| |
Sbjct 12740 CGTTGGTTCCACGAATGTAGGATTTACTGGCACGAATGTTGTGGGTTGCCAGACCAATTC 12681
Query 107070 CCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTG 107129
| || || |||| || || || || | | || || | ||||| || | ||| |
Sbjct 12680 CACCTGCGTACTTCGAAATCACGGCGCAGCTCTTGAGTGTGTCGTAGATGCCATCGATGG 12621
Query 107130 AGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTG-TACCAGCA 107188
|||| ||||| | | | || || ||| ||||||||| || ||| || | || ||
Sbjct 12620 AGTCTTCCTTCATTGTCAACAGAAAACAAGAGGACATCTGAGGG-TTGTTGGTTCCGGCG 12562
Query 107189 TTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGACATCTTGTCGTATGTCTCC 107248
||||||||||| ||||| || || |||| | || || | | || ||||||
Sbjct 12561 TTGAAGAGGGTCGGTGTGGCATGGGTGAAGTATCGTTCCGAGAGGCCTTTATAGGTCTCC 12502
Query 107249 AAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAAACATGTATTGG 107308
||||| || || || || ||||| || || | ||| || ||||| |||||| | ||
Sbjct 12501 AAGACCCGCTCGATATCATCTCCGTGAATTCCAACGGCGACGCGCATCAACATGCACTGT 12442
Query 107309 GGTGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATAGCTCTTCTCAAGGGTTTTGAGA 107368
||| ||| || |||||| |||| | | ||| |||||| |||||||| | |
Sbjct 12441 GGTCGTTCTGCGATCTTGCCATTGAGCTTRAGCAAGTAGGACTTCTCGAGGGTTTTAAAA 12382
Query 107369 CCAAAGTAA 107377
|||||||||
Sbjct 12381 CCAAAGTAA 12373
>seq137
Length=130264
Score = 98.7 bits (108), Expect = 1e-15
Identities = 189/279 (68%), Gaps = 0/279 (0%)
Strand=Plus/Minus
Query 9191 ACGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGC 9250
||| ||||| ||||| ||||| || || | || || || || |||||||| || |
Sbjct 127205 ACGGTCAAATCGACCGGGACGCGTTAGGGCTTGGTCCAGAATGTCCACGCGATTTGTGCC 127146
Query 9251 GGCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTT 9310
||| | |||||||| ||| ||| |||| || |||||||||||| | | ||| ||
Sbjct 127145 GGCCAAGACAACAACACCACTTTTTGTATCGAATCCATCCATCTCTACTAGCATTTGATT 127086
Query 9311 AATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCTTTCCCAC 9370
| ||| | ||| |||||||| || || | || ||| | ||||| || ||
Sbjct 127085 TAGAGTGTTTTCACGTTCATCGTTTCCTCCAACCCCGCCACGCCCACGTTGGCGACCAAC 127026
Query 9371 GGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAG 9430
||||| |||||||| ||||||| ||| || ||| ||| || | || | || |
Sbjct 127025 AGCATCTATCTCATCGATGAAGATAATGCACGGTGAATTCTCTCTTGCCTCCTTGAATAA 126966
Query 9431 ATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTC 9469
|||||||| | | | || ||||| |||||||| ||
Sbjct 126965 GTCGCGAACTCGTGATGGTCCAACACCCACAAACATTTC 126927
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 589972695138760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |