Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_015279.1 Length=190789 Score E Sequences producing significant alignments: (Bits) Value seq217 654 0.0 >seq217 Length=78499 Score = 654 bits (724), Expect = 0.0 Identities = 743/995 (75%), Gaps = 2/995 (0%) Strand=Plus/Plus Query 179737 CGTGGGATAACTTCTGCGAGTGGGTAACCTCTACCAATAACCGCCTCTATGTCGGTTGGT 179796 ||||||| || |||| | | ||| | || ||| | |||||||| || ||||||||| Sbjct 40570 CGTGGGAAAAATTCTCCAACTGGATCACAAGCACCGACAACCGCCTTTACATCGGTTGGT 40629 Query 179797 TCGGCGTTCTGATGATTCCAACTCTGTTGGCAGCAACTATC-TGCTTCATCGTCGCCTTC 179855 |||| | | ||| | |||||||| | || ||| | ||| |||||||| || || Sbjct 40630 TCGGTACTATCATGTTCCCAACTCTTCTTGCCGCAGC-ATCATGCTTCATTACTGCATTT 40688 Query 179856 ATCGCTGCTCCCCCTGTGGACATCGATGGCATCCGTGAACCCGTCGCTGGTTCACTCATG 179915 || || || || ||||||||||| || || ||||| ||||| || || || || || | Sbjct 40689 ATTGCCGCACCTCCTGTGGACATTGACGGAATCCGCGAACCTGTTGCCGGATCTCTTCTT 40748 Query 179916 TATGGTAACAACATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGTCTTCAC 179975 || ||||| ||||||||| | || | || | ||||||| ||||||||| || | ||| Sbjct 40749 TACGGTAATAACATCATCACCGGGTCTGTCATCCCTTCTTMCAACGCAATCGGGATGCAC 40808 Query 179976 TTCTATCCCATCTGGGAAGCCGCATCGCTTGACGAGTGGCTGTATAACGGTGGTCCTTTC 180035 ||||| ||| | |||||||| || || | ||||| ||| |||| ||||| || || | | Sbjct 40809 TTCTACCCCGTTTGGGAAGCTGCCTCCATGGACGAATGGTTGTACAACGGAGGACCCTAC 40868 Query 180036 CAACTTGTCGTCTTCCACTTCCTGATTGGCATCTATGCCTACATGGGTCGTGAGTGGGAA 180095 ||| | || || | |||||||| | || | | | |||||||| |||||||||||| Sbjct 40869 CAATTGGTTGTGATGCACTTCCTTCTCGGAGTTGCTTCGTACATGGGCCGTGAGTGGGAA 40928 Query 180096 CTTTCTTATCGCTTGGGTATGCGCCCCTGGATCTGCGTAGCATATTCTGCTCCAGTCGCT 180155 ||||| |||||| | || ||||| || ||||| | || |||| || || || || || Sbjct 40929 CTTTCGTATCGCCTCGGAATGCGTCCTTGGATTTTTGTTGCATTCTCCGCACCTGTTGCA 40988 Query 180156 GCAGCATCTGCTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCATTCTCTGACGCAATG 180215 || || | ||||| |||||| ||| || | || ||||| ||||| || | ||| Sbjct 40989 GCCGCCACCGCTGTCTTCCTCACCTACCCCATTGGGCAAGGAAGTTTCTCAGATGGCATG 41048 Query 180216 CCCCTCGGCATTTCTGGCACCTTCAACTACATGCTTGTTTTCCAAGCAGAGCACAACATC 180275 || || || || || |||||||||| |||| | || ||||| || |||||||||||| Sbjct 41049 CCTCTTGGTATCAGCGGAACCTTCAACTTCATGTTGGTCTTCCAGGCCGAGCACAACATC 41108 Query 180276 CTGATGCACCCCTTCCACATGCTGGGAGTAGCAGGTGTCTTCGGCGGTTCACTGTTCTCC 180335 || |||||||| | || ||| ||||| |||||||||||||| || || |||||||| Sbjct 41109 CTTATGCACCCGCTTCATATGGCCGGAGTTGCAGGTGTCTTCGGAGGATCTTTGTTCTCC 41168 Query 180336 GCAATGCACGGTTCACTGGTTACCTCTTCACTGGTTCGTGAAACCACTGAAACTGAGTCC 180395 || |||||||| || || ||||| || || || | ||||||||||| |||| || ||| Sbjct 41169 GCCATGCACGGGTCTCTTGTTACTTCCTCTTTGATCCGTGAAACCACCGAAAACGAATCC 41228 Query 180396 CAGAACTACGGTTACAAGTTTGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCACAT 180455 || |||| ||||||||||| || ||||| || ||||||||||| || || || || Sbjct 41229 ACCAATAACGGATACAAGTTTGGCCAGGAAGAGGAAACCTACAACATTGTCGCCGCTCAC 41288 Query 180456 GGATACTTCGGTCGTCTGATCTTCCAGTATGCATCGTTCAACAACTCCCGTTCACTTCAC 180515 || ||||| || ||||| |||||||| || || |||||||||||||| ||| | |||||| Sbjct 41289 GGGTACTTTGGACGTCTCATCTTCCAATACGCGTCGTTCAACAACTCGCGTGCTCTTCAC 41348 Query 180516 TTCTTCCTGGCAGCATGGCCTGTCGTTGGCATCTGGTTCACTGCACTGGGCGTAAGCACC 180575 |||||| | || |||||||| | || ||||||| ||| || |||| || |||| Sbjct 41349 TTCTTCTTAGCTCTCTGGCCTGTATTGGGTATCTGGTGCACCGCCATGGGTGTCTCCACC 41408 Query 180576 ATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCATTGATGGTCAAGGTCGT 180635 ||||| |||||||||||||| ||||||||||||||| | |||| || | || ||| Sbjct 41409 ATGGCCTTCAACCTCAACGGATTCAACTTCAACCAGGCTGTCATCGACTCCGAGGGACGT 41468 Query 180636 GTGCTCAACACTTGGGCAGACGTACTCAACCGCGCTGGTCTGGGTATGGAAGTTATGCAC 180695 || ||||||| ||||| ||| || ||||||| || | ||| || ||||| || |||||| Sbjct 41469 GTCATCAACACCTGGGCCGACATAATCAACCGTGCCGATCTTGGAATGGAGGTCATGCAC 41528 Query 180696 GAGCGTAATGCTCACAACTTCCCACTTGACCTGGC 180730 || ||||||||||| ||||| || ||||| |||| Sbjct 41529 GAACGTAATGCTCATAACTTTCCTCTTGATTTGGC 41563 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610388414673960