Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq217 495 4e-135 seq2 93.3 5e-14 >seq217 Length=78499 Score = 495 bits (548), Expect = 4e-135 Identities = 679/947 (72%), Gaps = 2/947 (0%) Strand=Plus/Plus Query 169444 GGTTGGTTTGGTGTTCTAATGATTCCATGCTTACTCACAGCAGCAGCATGTTTCATCGTT 169503 |||||||| ||| | | ||| | ||| | || | |||||| |||| ||||| | Sbjct 40623 GGTTGGTTCGGTACTATCATGTTCCCAACTCTTCTTGCCGCAGCATCATGCTTCATTACT 40682 Query 169504 GCATTCATTGCAGCACCTCCTGTCGATATCGACGGAATCAGAGAACCAGTAGCGGGTTCT 169563 ||||| ||||| ||||||||||| || || ||||||||| | ||||| || || || ||| Sbjct 40683 GCATTTATTGCCGCACCTCCTGTGGACATTGACGGAATCCGCGAACCTGTTGCCGGATCT 40742 Query 169564 -TTCTTGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCTATCGG 169622 ||||| || ||||| ||||||||| | || | || | || || | ||||| ||||| Sbjct 40743 CTTCTT-TACGGTAATAACATCATCACCGGGTCTGTCATCCCTTCTTMCAACGCAATCGG 40801 Query 169623 ACTACACTTCTACCCAATCTGGGAAGCAGCAACTGTTGATGAATGGTTGTATAATGGTGG 169682 | ||||||||||| | |||||||| || | | || ||||||||||| || || || Sbjct 40802 GATGCACTTCTACCCCGTTTGGGAAGCTGCCTCCATGGACGAATGGTTGTACAACGGAGG 40861 Query 169683 TCCTTATCAGTTGGTAATCTTCCACTTCCTTATTGGTATCTCAGCATACATGGGAAGACA 169742 || || || ||||| | | ||||||||| | || | | | |||||||| | | Sbjct 40862 ACCCTACCAATTGGTTGTGATGCACTTCCTTCTCGGAGTTGCTTCGTACATGGGCCGTGA 40921 Query 169743 GTGGGAACTATCATACAGATTAGGAATGCGTCCTTGGATCTGTGTTGCATACTCTGCACC 169802 ||||||||| || || | | ||||||||||||||||| | |||||||| ||| ||||| Sbjct 40922 GTGGGAACTTTCGTATCGCCTCGGAATGCGTCCTTGGATTTTTGTTGCATTCTCCGCACC 40981 Query 169803 AGTATCTGCTGCATTCGCTGTATTCTTAGTATACCCATTTGGTCAGGGTTCATTCTCTGA 169862 || | || || |||||| ||| | ||||| |||| || || ||||| || Sbjct 40982 TGTTGCAGCCGCCACCGCTGTCTTCCTCACCTACCCCATTGGGCAAGGAAGTTTCTCAGA 41041 Query 169863 TGGTATGCCACTAGGTATCTCAGGTACTTTCAACTTTATGTTCGTTTTCCAAGCAGAGCA 169922 ||| ||||| || |||||| || || |||||||| ||||| || ||||| || ||||| Sbjct 41042 TGGCATGCCTCTTGGTATCAGCGGAACCTTCAACTTCATGTTGGTCTTCCAGGCCGAGCA 41101 Query 169923 TAACATTCTAATGCATCCTTTCCACATGGCAGGAGTAGCAGGAATGTTCGGAGGATCTTT 169982 ||||| || ||||| || | || ||||| ||||| ||||| | |||||||||||||| Sbjct 41102 CAACATCCTTATGCACCCGCTTCATATGGCCGGAGTTGCAGGTGTCTTCGGAGGATCTTT 41161 Query 169983 ATTCTCAGCAATGCATGGTTCACTTGTTACTTCATCTCTAATCAGAGAAACAACAGAGCA 170042 ||||| || ||||| || || ||||||||||| ||| | ||| | ||||| || || | Sbjct 41162 GTTCTCCGCCATGCACGGGTCTCTTGTTACTTCCTCTTTGATCCGTGAAACCACCGAAAA 41221 Query 170043 AGAGTCACAGAACTATGGTTATAAGTTCGGACAAGAAGAAGAAACATACAACATAGTAGC 170102 || || || | || || ||||| || || ||||| ||||| |||||||| || || Sbjct 41222 CGAATCCACCAATAACGGATACAAGTTTGGCCAGGAAGAGGAAACCTACAACATTGTCGC 41281 Query 170103 AGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCATTCAACAACTCAAGAAG 170162 || ||||| |||||||| ||||| |||||||| || || || ||||||||||| | Sbjct 41282 CGCTCACGGGTACTTTGGACGTCTCATCTTCCAATACGCGTCGTTCAACAACTCGCGTGC 41341 Query 170163 TCTACACTTCTTCCTAGCAGTTTTCCCTGTTGTATGTGTATGGTTAACCTCTATGGGTAT 170222 ||| ||||||||| |||| | | ||||| | || | |||| ||| | |||||| | Sbjct 41342 TCTTCACTTCTTCTTAGCTCTCTGGCCTGTATTGGGTATCTGGTGCACCGCCATGGGTGT 41401 Query 170223 CTGCACAATGGCATTCAACTTGAATGGTTTCAACTTTAACCAATCAGTTGTTGATGCTAA 170282 || ||| ||||| |||||| | || || |||||||| ||||| | || | || | | Sbjct 41402 CTCCACCATGGCCTTCAACCTCAACGGATTCAACTTCAACCAGGCTGTCATCGACTCCGA 41461 Query 170283 CGGAAAAATCGTCCCAACATGGGGTGATGTTCTAAACAGAGCAAACTTGGGTATGGAAGT 170342 ||| || || || |||| || | | ||| | || | | || ||||| || Sbjct 41462 GGGACGTGTCATCAACACCTGGGCCGACATAATCAACCGTGCCGATCTTGGAATGGAGGT 41521 Query 170343 TATGCATGAAAGAAATGCACACAACTTCCCACTAGACCTAGCATCTG 170389 ||||| ||| | ||||| || ||||| || || || | || |||| Sbjct 41522 CATGCACGAACGTAATGCTCATAACTTTCCTCTTGATTTGGCTTCTG 41568 >seq2 Length=515016 Score = 93.3 bits (102), Expect = 5e-14 Identities = 129/179 (72%), Gaps = 4/179 (2%) Strand=Plus/Plus Query 153253 GAAACGTTCTTGAGAATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGATAT 153312 ||||||| || || ||||| | |||||||| | ||||| || ||||| ||||| |||| Sbjct 348719 GAAACGTGCTAGAAAATCCCGGCTGGTACACTGCATACACCCCTTATCAGGCTGAAATAT 348778 Query 153313 CTCAGGGAAGATTGGAA--GCTTTATTCAATTACCAAACGCTCATCACAGAACTTACAGG 153370 | ||||| | | ||| ||||| | |||| |||||| || || ||| | || || Sbjct 348779 CACAGGGGCGTCTAGAAATGCTTT--TGAATTTCCAAACACTTGTCGTAGACTTGACGGG 348836 Query 153371 ATTACCAATAGCAAACGCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAATGC 153429 | |||| || || || ||| | || || ||| | | ||| |||||||||||||||| Sbjct 348837 ACTACCTATGGCCGTAGCCTCTTTGTTGGACGAATCCAGTGCCGCAGCAGAAGCAATGC 348895 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579204843064160