Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_015281.1 Length=179563 Score E Sequences producing significant alignments: (Bits) Value seq217 598 5e-166 >seq217 Length=78499 Score = 598 bits (662), Expect = 5e-166 Identities = 736/1002 (73%), Gaps = 6/1002 (1%) Strand=Plus/Plus Query 167852 CGTGGAATGATTTCTGCGAGTGGGTAACATCAACTAACAACCGCCTCTATGTCGGTTGGT 167911 ||||| | | |||| | | ||| | ||| || |||||||||| || ||||||||| Sbjct 40570 CGTGGGAAAAATTCTCCAACTGGATCACAAGCACCGACAACCGCCTTTACATCGGTTGGT 40629 Query 167912 TCGGCGTAC--TGATGATTCCAACTCTGTTGGCAGCAACTATC-TGTTTCATCGTCGCCT 167968 ||| |||| | ||| | |||||||| | || ||| | ||| || ||||| || | Sbjct 40630 TCG--GTACTATCATGTTCCCAACTCTTCTTGCCGCAGC-ATCATGCTTCATTACTGCAT 40686 Query 167969 TCGTCGCTGCTCCCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCA 168028 | | || || || ||||||||||| ||||| ||||| ||||| || || || || || Sbjct 40687 TTATTGCCGCACCTCCTGTGGACATTGACGGAATCCGCGAACCTGTTGCCGGATCTCTTC 40746 Query 168029 TGTATGGTAACAACATCATCTCTGGTGCAGTTGTCCCTTCTTCTAATGCTATTGGACTTC 168088 | || ||||| ||||||||| | || | || ||||||||| || || || || | | Sbjct 40747 TTTACGGTAATAACATCATCACCGGGTCTGTCATCCCTTCTTMCAACGCAATCGGGATGC 40806 Query 168089 ACTTCTATCCCATCTGGGAAGCAGCATCACTCGATGAGTGGTTGTATAACGGTGGTCCTT 168148 ||||||| ||| | |||||||| || || | || || |||||||| ||||| || || | Sbjct 40807 ACTTCTACCCCGTTTGGGAAGCTGCCTCCATGGACGAATGGTTGTACAACGGAGGACCCT 40866 Query 168149 TCCAACTAGTAGTCTTTCACTTCCTCATCGGTATCTATGCATACATGGGACGTGAATGGG 168208 |||| | || || | |||||||| |||| | | | |||||||| ||||| |||| Sbjct 40867 ACCAATTGGTTGTGATGCACTTCCTTCTCGGAGTTGCTTCGTACATGGGCCGTGAGTGGG 40926 Query 168209 AACTTTCATATCGTTTAGGTATGCGTCCATGGATCTGTGTTGCATACTCTGCACCAGTCG 168268 ||||||| ||||| | || |||||||| ||||| | |||||||| ||| ||||| || | Sbjct 40927 AACTTTCGTATCGCCTCGGAATGCGTCCTTGGATTTTTGTTGCATTCTCCGCACCTGTTG 40986 Query 168269 CTGCAGCGAGTGCAGTATTCCTAGTGTATCCTTTCGGTCAAGGTAGTTTCTCTGATGCAA 168328 | || || | || || ||||| || || | || ||||| |||||||| |||| | Sbjct 40987 CAGCCGCCACCGCTGTCTTCCTCACCTACCCCATTGGGCAAGGAAGTTTCTCAGATGGCA 41046 Query 168329 TGCCACTCGGAATCTCAGGAACATTCAACTACATGTTGGTCTTCCAAGCTGAGCACAATA 168388 |||| || || ||| ||||| ||||||| ||||||||||||||| || |||||||| | Sbjct 41047 TGCCTCTTGGTATCAGCGGAACCTTCAACTTCATGTTGGTCTTCCAGGCCGAGCACAACA 41106 Query 168389 TTCTCATGCATCCCTTCCATATGCTCGGCGTTGCTGGGGTATTTGGTGGCAGTTTGTTTA 168448 | || ||||| || | |||||| ||| ||||| || || || || || |||||| Sbjct 41107 TCCTTATGCACCCGCTTCATATGGCCGGAGTTGCAGGTGTCTTCGGAGGATCTTTGTTCT 41166 Query 168449 GTGCTATGCACGGAAGTTTGGTTACTTCTTCTCTCGTTAGAGAGACGACTGAAACCGAAT 168508 || |||||||| | | |||||||| ||| | | | || || || |||| ||||| Sbjct 41167 CCGCCATGCACGGGTCTCTTGTTACTTCCTCTTTGATCCGTGAAACCACCGAAAACGAAT 41226 Query 168509 CCCAAAACTACGGTTACAAGTTCGGACAAGAAGAAGAAACATACAACATCGTAGCCGCTC 168568 || || |||| |||||||| || || ||||| ||||| |||||||| || ||||||| Sbjct 41227 CCACCAATAACGGATACAAGTTTGGCCAGGAAGAGGAAACCTACAACATTGTCGCCGCTC 41286 Query 168569 ATGGTTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGCTCCTTGC 168628 | || ||||| || ||| | |||||||||||||| || ||||||||||| || | | | Sbjct 41287 ACGGGTACTTTGGACGTCTCATCTTCCAATACGCGTCGTTCAACAACTCGCGTGCTCTTC 41346 Query 168629 ACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTCTCCA 168688 |||||||| | ||| |||||||| | || ||||||| ||||||| | || ||||||| Sbjct 41347 ACTTCTTCTTAGCTCTCTGGCCTGTATTGGGTATCTGGTGCACCGCCATGGGTGTCTCCA 41406 Query 168689 CGATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTC 168748 | ||||| |||||||| ||||| ||||||||||||||| | || | || |||| | Sbjct 41407 CCATGGCCTTCAACCTCAACGGATTCAACTTCAACCAGGCTGTCATCGACTCCGAGGGAC 41466 Query 168749 GTGTGTTGAACACCTGGGCAGATGTTCTGAACCGCGCTGGTCTGGGTATGGAAGTTATGC 168808 |||| | ||||||||||| || | | ||||| || | ||| || ||||| || |||| Sbjct 41467 GTGTCATCAACACCTGGGCCGACATAATCAACCGTGCCGATCTTGGAATGGAGGTCATGC 41526 Query 168809 ATGAGCGTAACGCACACAACTTCCCACTCGATCTTGCTGCTG 168850 | || ||||| || || ||||| || || ||| | ||| ||| Sbjct 41527 ACGAACGTAATGCTCATAACTTTCCTCTTGATTTGGCTTCTG 41568 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 574465708168920