Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_015282.1 Length=174079 Score E Sequences producing significant alignments: (Bits) Value seq217 720 0.0 >seq217 Length=78499 Score = 720 bits (798), Expect = 0.0 Identities = 789/1043 (76%), Gaps = 5/1043 (0%) Strand=Plus/Plus Query 163776 TGGGAATCATTCTGCGAATGGGTGACTTCCACAAACAACCGCCTCTATGTTGGTTGGTTC 163835 |||||| ||||| | | ||| | || ||| |||||||||| || | ||||||||| Sbjct 40572 TGGGAAAAATTCTCCAACTGGATCACAAGCACCGACAACCGCCTTTACATCGGTTGGTTC 40631 Query 163836 GGCGTTCTGATGATCCCTACGCTGCTTGCAGCAACCATC-TGTTTCATCGTCGCCTTCGT 163894 || | | ||| |||| || || ||||| || | |||| || ||||| || || | Sbjct 40632 GGTACTATCATGTTCCCAACTCTTCTTGCCGC-AGCATCATGCTTCATTACTGCATTTAT 40690 Query 163895 CGCTGCTCCCCCTGTGGACATCGATGGTATTCGTGAACCTGTTGCAGGTTCGCTCATGTA 163954 || || || ||||||||||| || || || || ||||||||||| || || || | || Sbjct 40691 TGCCGCACCTCCTGTGGACATTGACGGAATCCGCGAACCTGTTGCCGGATCTCTTCTTTA 40750 Query 163955 TGGTAACAACATCATCTCTGGTGCAGTTGTTCCCTCGTCCAATGCAATTGGTCTTCACTT 164014 ||||| ||||||||| | || | || | || || | ||| ||||| || | ||||| Sbjct 40751 CGGTAATAACATCATCACCGGGTCTGTCATCCCTTCTTMCAACGCAATCGGGATGCACTT 40810 Query 164015 CTACCCCATTTGGGAAGCCGCATCCCTTGATGAATGGCTTTACAACGGTGGTCCTTTCCA 164074 ||||||| |||||||||| || ||| | || |||||| | |||||||| || || | ||| Sbjct 40811 CTACCCCGTTTGGGAAGCTGCCTCCATGGACGAATGGTTGTACAACGGAGGACCCTACCA 40870 Query 164075 ACTTGTCGTCTTCCACTTCCTGATCGGTATCTATGCATACATGGGTCGTGAGTGGGAACT 164134 | | || || | |||||||| |||| | | | |||||||| |||||||||||||| Sbjct 40871 ATTGGTTGTGATGCACTTCCTTCTCGGAGTTGCTTCGTACATGGGCCGTGAGTGGGAACT 40930 Query 164135 GTCTTACCGTCTTGGTATGCGTCCTTGGATTTGTGTTGCTTACTCTGCACCCGTTGCAGC 164194 || || || || || |||||||||||||||| |||||| | ||| ||||| |||||||| Sbjct 40931 TTCGTATCGCCTCGGAATGCGTCCTTGGATTTTTGTTGCATTCTCCGCACCTGTTGCAGC 40990 Query 164195 AGCATCCGCAGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCGTTCTCTGACGCAATGCC 164254 || |||| |||||||| ||| || | || ||||| ||||| || | ||||| Sbjct 40991 CGCCACCGCTGTCTTCCTCACCTACCCCATTGGGCAAGGAAGTTTCTCAGATGGCATGCC 41050 Query 164255 CCTGGGCATCTCTGGCACCTTCAACTACATGTTGGTGTTCCAAGCAGAGCACAACATCCT 164314 || || ||| || |||||||||| ||||||||| ||||| || |||||||||||||| Sbjct 41051 TCTTGGTATCAGCGGAACCTTCAACTTCATGTTGGTCTTCCAGGCCGAGCACAACATCCT 41110 Query 164315 GATGCACCCCTTCCATATGCTCGGCGTTGCTGGCGTATTTGGCGGTTCTCTGTTCAGTGC 164374 |||||||| | |||||| ||| ||||| || || || || || ||| ||||| || Sbjct 41111 TATGCACCCGCTTCATATGGCCGGAGTTGCAGGTGTCTTCGGAGGATCTTTGTTCTCCGC 41170 Query 164375 AATGCACGGTTCTCTGGTTACTTCTTCGCTGGTTCGTGAAACCACCGAAACTGAGTCCCA 164434 |||||||| ||||| |||||||| || || | |||||||||||||||| || ||| Sbjct 41171 CATGCACGGGTCTCTTGTTACTTCCTCTTTGATCCGTGAAACCACCGAAAACGAATCCAC 41230 Query 164435 GAACTATGGTTACAAGTTTGGTCAAGAAGAAGAAACATACAACATTGTTGCCGCTCACGG 164494 || | || ||||||||||| || ||||| ||||| ||||||||||| ||||||||||| Sbjct 41231 CAATAACGGATACAAGTTTGGCCAGGAAGAGGAAACCTACAACATTGTCGCCGCTCACGG 41290 Query 164495 TTACTTTGGTCGTCTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCACTT 164554 |||||||| ||||| |||||||||||||| || ||||||||||| ||| | | ||||| Sbjct 41291 GTACTTTGGACGTCTCATCTTCCAATACGCGTCGTTCAACAACTCGCGTGCTCTTCACTT 41350 Query 164555 CTTCCTTGCTGCATGGCCTGTTGTTGGCATCTGGTTCACCGCACTTGGTGTTTCCACGAT 164614 |||| | ||| |||||||| | || ||||||| |||||| | ||||| ||||| || Sbjct 41351 CTTCTTAGCTCTCTGGCCTGTATTGGGTATCTGGTGCACCGCCATGGGTGTCTCCACCAT 41410 Query 164615 GGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTGT 164674 ||| |||||||| ||||| ||||||||||||||| | ||||||| |||| ||||| Sbjct 41411 GGCCTTCAACCTCAACGGATTCAACTTCAACCAGGCTGTCATCGACTCCGAGGGACGTGT 41470 Query 164675 GCTCAACACTTGGGCAGACGTTCTCAACCGCGCTGGTCTGGGTATGGAAGTTATGCACGA 164734 ||||||| ||||| ||| | ||||||| || | ||| || ||||| || |||||||| Sbjct 41471 CATCAACACCTGGGCCGACATAATCAACCGTGCCGATCTTGGAATGGAGGTCATGCACGA 41530 Query 164735 GCGTAACGCTCACAACTTCCCTCTGGATCTCGCTGCTGCTGAG-TCCACTCCTGTCGCTC 164793 ||||| ||||| ||||| ||||| ||| | ||| ||| ||| | | | |||||||| Sbjct 41531 ACGTAATGCTCATAACTTTCCTCTTGATTTGGCTTCTGGCGAGATTCTC-CCTGTCGCAA 41589 Query 164794 TGACTGCACCCGCTATCGGTTGA 164816 || || || || ||| ||||| Sbjct 41590 TGGAGGCCCCAGCCATC-GTTGA 41611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556917149245560