Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_015283.1 Length=176428 Score E Sequences producing significant alignments: (Bits) Value seq217 524 9e-144 >seq217 Length=78499 Score = 524 bits (580), Expect = 9e-144 Identities = 712/994 (72%), Gaps = 0/994 (0%) Strand=Plus/Plus Query 168491 TTCTGCGAATGGGTAACAAGCACTAACAACAGACTTTATGTTGGTTGGTTCGGTGTCTTA 168550 |||| | | ||| | |||||||| ||||| | ||||| | |||||||||||| | Sbjct 40581 TTCTCCAACTGGATCACAAGCACCGACAACCGCCTTTACATCGGTTGGTTCGGTACTATC 40640 Query 168551 ATGATCCCATGTTTATTAACAGCAGCAGCATGTTTCATTGTTGCATTTATTGCTGCACCA 168610 ||| ||||| | | | | |||||| |||| |||||| |||||||||||| ||||| Sbjct 40641 ATGTTCCCAACTCTTCTTGCCGCAGCATCATGCTTCATTACTGCATTTATTGCCGCACCT 40700 Query 168611 CCTGTCGATATCGACGGAATCAGAGAACCTGTAGCAGGTGCTCTAATGTATGGAAACAAC 168670 ||||| || || ||||||||| | |||||||| || || |||| | || || || ||| Sbjct 40701 CCTGTGGACATTGACGGAATCCGCGAACCTGTTGCCGGATCTCTTCTTTACGGTAATAAC 40760 Query 168671 ATCATCTCAGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTACACTTCTACCCAATT 168730 |||||| | || | || | || |||| ||||||||||| | ||||||||||| || Sbjct 40761 ATCATCACCGGGTCTGTCATCCCTTCTTMCAACGCAATCGGGATGCACTTCTACCCCGTT 40820 Query 168731 TGGGAAGCAGCTACAATCGATGAGTGGTTATATAATGGTGGTCCTTACCAGTTGGTAATC 168790 |||||||| || | || || || ||||| || || || || || ||||| ||||| | Sbjct 40821 TGGGAAGCTGCCTCCATGGACGAATGGTTGTACAACGGAGGACCCTACCAATTGGTTGTG 40880 Query 168791 TTCCACTTCCTAATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAATTATCATACAGA 168850 | |||||||| ||||| | || | |||||||| | |||||||| | || || | Sbjct 40881 ATGCACTTCCTTCTCGGAGTTGCTTCGTACATGGGCCGTGAGTGGGAACTTTCGTATCGC 40940 Query 168851 CTAGGTATGAGACCTTGGATCTGTGTTGCTTATTCAGCACCAGTATCTGCAGCATTTGCA 168910 || || ||| | |||||||| | |||||| | || ||||| || | || || || Sbjct 40941 CTCGGAATGCGTCCTTGGATTTTTGTTGCATTCTCCGCACCTGTTGCAGCCGCCACCGCT 41000 Query 168911 GTATTCCTTGTATACCCATTTGGTCAGGGTTCTTTCTCTGATGGTATGCCTCTAGGAATT 168970 || ||||| ||||| |||| || || |||||| ||||| |||||||| || || Sbjct 41001 GTCTTCCTCACCTACCCCATTGGGCAAGGAAGTTTCTCAGATGGCATGCCTCTTGGTATC 41060 Query 168971 TCTGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCATCCC 169030 ||||| |||||||||||||| || ||||| || ||||||||||| |||||||| || Sbjct 41061 AGCGGAACCTTCAACTTCATGTTGGTCTTCCAGGCCGAGCACAACATCCTTATGCACCCG 41120 Query 169031 TTCCATATGGCAGGAGTAGCAGGTATGTTCGGTGGATCTCTATTCTCCGCAATGCATGGT 169090 | |||||||| ||||| |||||| | ||||| |||||| | |||||||| ||||| || Sbjct 41121 CTTCATATGGCCGGAGTTGCAGGTGTCTTCGGAGGATCTTTGTTCTCCGCCATGCACGGG 41180 Query 169091 TCACTTGTAACATCTTCTCTAATCAGAGAGACTACTGAGGAAGAATCTCAGAACTATGGT 169150 || ||||| || || ||| | ||| | || || || || | ||||| || | || Sbjct 41181 TCTCTTGTTACTTCCTCTTTGATCCGTGAAACCACCGAAAACGAATCCACCAATAACGGA 41240 Query 169151 TACAAGTTCGGTCAAGAAGAAGAAACCTATAATATTGTTGCAGCACATGGATACTTCGGT 169210 |||||||| || || ||||| |||||||| || ||||| || || || || ||||| || Sbjct 41241 TACAAGTTTGGCCAGGAAGAGGAAACCTACAACATTGTCGCCGCTCACGGGTACTTTGGA 41300 Query 169211 AGATTAATCTTCCAGTATGCAAGTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTAGCA 169270 | | |||||||| || || ||||||||||| | ||||||||||||| |||| Sbjct 41301 CGTCTCATCTTCCAATACGCGTCGTTCAACAACTCGCGTGCTCTTCACTTCTTCTTAGCT 41360 Query 169271 GTGTTCCCAGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAAC 169330 | | || || | || | |||| ||| | |||||| ||| || ||||| |||||| Sbjct 41361 CTCTGGCCTGTATTGGGTATCTGGTGCACCGCCATGGGTGTCTCCACCATGGCCTTCAAC 41420 Query 169331 TTGAACGGATTTAACTTTAACCAATCAGTTGTAGATGTTAACGGTAAGATCATTCCTACA 169390 | |||||||| ||||| ||||| | || | || | || |||| || Sbjct 41421 CTCAACGGATTCAACTTCAACCAGGCTGTCATCGACTCCGAGGGACGTGTCATCAACACC 41480 Query 169391 TGGGGTGACGTACTTAACAGAGCAAACCTTGGTATGGAAGTAATGCATGAGCGTAACGCT 169450 |||| ||| || | ||| | || | ||||| ||||| || ||||| || ||||| ||| Sbjct 41481 TGGGCCGACATAATCAACCGTGCCGATCTTGGAATGGAGGTCATGCACGAACGTAATGCT 41540 Query 169451 CACAACTTCCCACTAGACTTAGCATCTGCTGAGA 169484 || ||||| || || || || || |||| |||| Sbjct 41541 CATAACTTTCCTCTTGATTTGGCTTCTGGCGAGA 41574 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 564433845983520