Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq217 524 9e-144 seq2 96.9 4e-15 >seq217 Length=78499 Score = 524 bits (580), Expect = 9e-144 Identities = 698/965 (72%), Gaps = 4/965 (0%) Strand=Plus/Plus Query 171845 ACAACAGAATTTATGTTGGTTGGTTCGGTGTACTCATGATCCCATGTTTGCTCACAGCAG 171904 ||||| | |||| | |||||||||||| ||||| ||||| | | || | |||| Sbjct 40606 ACAACCGCCTTTACATCGGTTGGTTCGGTACTATCATGTTCCCAACTCTTCTTGCCGCAG 40665 Query 171905 CAGCATGCTTCATCGTTGCATTCATTGCAGCACCTCCTGTCGATATCGACGGAATCAGAG 171964 || |||||||||| |||||| ||||| ||||||||||| || || ||||||||| | | Sbjct 40666 CATCATGCTTCATTACTGCATTTATTGCCGCACCTCCTGTGGACATTGACGGAATCCGCG 40725 Query 171965 AACCAGTTGCGGGTTCT-TTCTTATATGGTAACAACATCATCTCTGGTGCAGTTGTTCCA 172023 |||| ||||| || ||| ||||| || ||||| ||||||||| | || | || | || Sbjct 40726 AACCTGTTGCCGGATCTCTTCTT-TACGGTAATAACATCATCACCGGGTCTGTCATCCCT 40784 Query 172024 TCATCAAACGCAATAGGTCTCCACTTCTACCCTATCTGGGAAGCAGCAACCGTAGATGAA 172083 || | |||||||| || | ||||||||||| | |||||||| || || | || ||| Sbjct 40785 TCTTMCAACGCAATCGGGATGCACTTCTACCCCGTTTGGGAAGCTGCCTCCATGGACGAA 40844 Query 172084 TGGTTGTACAATGGTGGTCCTTATCAGTTGGTAATCTTCCACTTCCTTATCGGTATCTCA 172143 ||||||||||| || || || || || ||||| | | ||||||||| |||| | | Sbjct 40845 TGGTTGTACAACGGAGGACCCTACCAATTGGTTGTGATGCACTTCCTTCTCGGAGTTGCT 40904 Query 172144 GCATACATGGGAAGACAGTGGGAACTATCATACAGATTAGGTATGAGACCATGGATATGT 172203 | |||||||| | |||||||||| || || | | || ||| | || ||||| | | Sbjct 40905 TCGTACATGGGCCGTGAGTGGGAACTTTCGTATCGCCTCGGAATGCGTCCTTGGATTTTT 40964 Query 172204 GTAGCATATTCAGCACCTGTATCAGCAGCATTTGCTGTGTTCCTTGTGTATCCATTCGGT 172263 || |||| || |||||||| |||| || ||||| ||||| || || | || Sbjct 40965 GTTGCATTCTCCGCACCTGTTGCAGCCGCCACCGCTGTCTTCCTCACCTACCCCATTGGG 41024 Query 172264 CAGGGTTCATTCTCTGATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTTATGTTC 172323 || || ||||| ||||| ||||| || |||||| || || |||||||| ||||| Sbjct 41025 CAAGGAAGTTTCTCAGATGGCATGCCTCTTGGTATCAGCGGAACCTTCAACTTCATGTTG 41084 Query 172324 GTGTTCCAAGCAGAGCATAACATTCTAATGCATCCTTTCCACATGGCAGGAGTAGCAGGA 172383 || ||||| || ||||| ||||| || ||||| || | || ||||| ||||| ||||| Sbjct 41085 GTCTTCCAGGCCGAGCACAACATCCTTATGCACCCGCTTCATATGGCCGGAGTTGCAGGT 41144 Query 172384 ATGTTTGGAGGATCTTTATTCTCAGCAATGCACGGTTCTTTAGTTACATCTTCTCTAATC 172443 | || ||||||||||| ||||| || |||||||| ||| | ||||| || ||| | ||| Sbjct 41145 GTCTTCGGAGGATCTTTGTTCTCCGCCATGCACGGGTCTCTTGTTACTTCCTCTTTGATC 41204 Query 172444 AGAGAGACAACTGAAGCAGAATCACAGAACTACGGATACAAGTTCGGACAAGAAGAAGAA 172503 | || || || ||| ||||| || ||||||||||||| || || ||||| ||| Sbjct 41205 CGTGAAACCACCGAAAACGAATCCACCAATAACGGATACAAGTTTGGCCAGGAAGAGGAA 41264 Query 172504 ACATACAACATAGTAGCAGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCT 172563 || |||||||| || || || ||||| |||||||| ||||| |||||||| || || || Sbjct 41265 ACCTACAACATTGTCGCCGCTCACGGGTACTTTGGACGTCTCATCTTCCAATACGCGTCG 41324 Query 172564 TTCAACAACTCAAGAAGTCTTCACTTCTTCCTAGCAGTTTTCCCTGTTGTATGTGTATGG 172623 ||||||||||| | ||||||||||||| |||| | | ||||| | || | ||| Sbjct 41325 TTCAACAACTCGCGTGCTCTTCACTTCTTCTTAGCTCTCTGGCCTGTATTGGGTATCTGG 41384 Query 172624 TTAACCTCTATGGGTATCTGTACAATGGCATTCAACCTTAACGGTTTCAACTTCAACCAA 172683 | ||| | |||||| ||| || ||||| |||||||| ||||| |||||||||||||| Sbjct 41385 TGCACCGCCATGGGTGTCTCCACCATGGCCTTCAACCTCAACGGATTCAACTTCAACCAG 41444 Query 172684 TCAGTTGTAGATGCTAACGGTAAGATTGTTC-CTACATGGGGTGACGTTCTTAACAGAGC 172742 | || | || | | || | | | || || |||| ||| | | ||| | || Sbjct 41445 GCTGTCATCGACTCCGA-GGGACGTGTCATCAACACCTGGGCCGACATAATCAACCGTGC 41503 Query 172743 AAACCTAGGTATGGAAGTTATGCATGAAAGAAATGCACACAACTTCCCATTAGACCTTGC 172802 | || || ||||| || ||||| ||| | ||||| || ||||| || | || | || Sbjct 41504 CGATCTTGGAATGGAGGTCATGCACGAACGTAATGCTCATAACTTTCCTCTTGATTTGGC 41563 Query 172803 TTCTG 172807 ||||| Sbjct 41564 TTCTG 41568 >seq2 Length=515016 Score = 96.9 bits (106), Expect = 4e-15 Identities = 130/179 (73%), Gaps = 4/179 (2%) Strand=Plus/Plus Query 157928 GAAACGTTCTTGAGAATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGATAT 157987 ||||||| || || ||||| | |||||||| | ||||| || ||||| ||||| |||| Sbjct 348719 GAAACGTGCTAGAAAATCCCGGCTGGTACACTGCATACACCCCTTATCAGGCTGAAATAT 348778 Query 157988 CTCAGGGAAGATTGGAA--GCTTTATTCAATTACCAAACGCTCATCACAGAACTCACAGG 158045 | ||||| | | ||| ||||| | |||| |||||| || || ||| | || || Sbjct 348779 CACAGGGGCGTCTAGAAATGCTTT--TGAATTTCCAAACACTTGTCGTAGACTTGACGGG 348836 Query 158046 ACTACCGATAGCAAACGCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAATGC 158104 |||||| || || || ||| | || || ||| | | ||| |||||||||||||||| Sbjct 348837 ACTACCTATGGCCGTAGCCTCTTTGTTGGACGAATCCAGTGCCGCAGCAGAAGCAATGC 348895 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588043121646640