Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_015285.1 Length=174285 Score E Sequences producing significant alignments: (Bits) Value seq217 598 5e-166 >seq217 Length=78499 Score = 598 bits (662), Expect = 5e-166 Identities = 720/975 (74%), Gaps = 6/975 (1%) Strand=Plus/Plus Query 162406 ACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTAC--TGATGATTCCAACTCTGTTGG 162463 ||| | |||||||| || |||||||||||| |||| | ||| | |||||||| | | Sbjct 40602 ACCGACAACCGCCTTTACATCGGTTGGTTCG--GTACTATCATGTTCCCAACTCTTCTTG 40659 Query 162464 CAGCAACCATC-TGTTTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGACATCGACGGC 162522 | || | |||| || ||||| || || | || || || ||||||||||| ||||| Sbjct 40660 CCGC-AGCATCATGCTTCATTACTGCATTTATTGCCGCACCTCCTGTGGACATTGACGGA 40718 Query 162523 ATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCAGTT 162582 ||||| ||||| || || || || || | || ||||| ||||||||| | || | || Sbjct 40719 ATCCGCGAACCTGTTGCCGGATCTCTTCTTTACGGTAATAACATCATCACCGGGTCTGTC 40778 Query 162583 GTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCCGCATCACTT 162642 | || |||| ||||||||| || | |||||||| ||| | |||||||| || || | Sbjct 40779 ATCCCTTCTTMCAACGCAATCGGGATGCACTTCTACCCCGTTTGGGAAGCTGCCTCCATG 40838 Query 162643 GATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGTATTCCACTTCCTGATCGGC 162702 || || ||| |||| ||||| || || | |||| | || || | |||||||| |||| Sbjct 40839 GACGAATGGTTGTACAACGGAGGACCCTACCAATTGGTTGTGATGCACTTCCTTCTCGGA 40898 Query 162703 ATCTATGCCTACATGGGACGTGAATGGGAACTCTCTTACCGTCTTGGTATGCGTCCATGG 162762 | | | |||||||| ||||| |||||||| || || || || || |||||||| ||| Sbjct 40899 GTTGCTTCGTACATGGGCCGTGAGTGGGAACTTTCGTATCGCCTCGGAATGCGTCCTTGG 40958 Query 162763 ATCTGCGTAGCATACTCTGCACCTGTTGCAGCAGCATCGGCAGTCTTCCTGGTCTATCCT 162822 || | || |||| ||| |||||||||||||| || | || |||||||| ||| || Sbjct 40959 ATTTTTGTTGCATTCTCCGCACCTGTTGCAGCCGCCACCGCTGTCTTCCTCACCTACCCC 41018 Query 162823 TTCGGTCAAGGTTCTTTCTCTGACGCAATGCCCTTGGGTATCAGTGGTACATTCAACTAC 162882 | || ||||| |||||| || | ||||| | |||||||| || || ||||||| | Sbjct 41019 ATTGGGCAAGGAAGTTTCTCAGATGGCATGCCTCTTGGTATCAGCGGAACCTTCAACTTC 41078 Query 162883 ATGCTTGTCTTCCAAGCAGAGCACAACATTCTGATGCATCCCTTCCACATGTTGGGTGTC 162942 ||| | |||||||| || ||||||||||| || ||||| || | || ||| || || Sbjct 41079 ATGTTGGTCTTCCAGGCCGAGCACAACATCCTTATGCACCCGCTTCATATGGCCGGAGTT 41138 Query 162943 GCAGGTGTCTTCGGTGGTTCACTGTTCAGTGCAATGCACGGTTCTTTGGTTACATCTTCA 163002 |||||||||||||| || || ||||| || |||||||| ||| | ||||| || || Sbjct 41139 GCAGGTGTCTTCGGAGGATCTTTGTTCTCCGCCATGCACGGGTCTCTTGTTACTTCCTCT 41198 Query 163003 CTCGTCCGTGAGACGACTGAAACTGAGTCACAGAACTATGGTTACAAGTTCGGTCAAGAA 163062 | ||||||| || || |||| || || || | || |||||||| || || ||| Sbjct 41199 TTGATCCGTGAAACCACCGAAAACGAATCCACCAATAACGGATACAAGTTTGGCCAGGAA 41258 Query 163063 GAAGAGACATACAACATCGTCGCAGCCCATGGTTACTTCGGTCGTTTGATCTTCCAATAT 163122 || || || |||||||| ||||| || || || ||||| || ||| | ||||||||||| Sbjct 41259 GAGGAAACCTACAACATTGTCGCCGCTCACGGGTACTTTGGACGTCTCATCTTCCAATAC 41318 Query 163123 GCATCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTCGGC 163182 || || ||||||||||| ||| | | ||||||||| | ||| |||||||| | || Sbjct 41319 GCGTCGTTCAACAACTCGCGTGCTCTTCACTTCTTCTTAGCTCTCTGGCCTGTATTGGGT 41378 Query 163183 ATCTGGTTCACCGCCCTTGGCGTGTCAACCATGGCATTCAACCTGAACGGTTTCAACTTC 163242 ||||||| ||||||| | || || || |||||||| |||||||| ||||| ||||||||| Sbjct 41379 ATCTGGTGCACCGCCATGGGTGTCTCCACCATGGCCTTCAACCTCAACGGATTCAACTTC 41438 Query 163243 AACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGACGTTCTGAAC 163302 |||||| | || | || |||| ||||| | ||||||||||| ||| | | ||| Sbjct 41439 AACCAGGCTGTCATCGACTCCGAGGGACGTGTCATCAACACCTGGGCCGACATAATCAAC 41498 Query 163303 CGTGCAGGTTTGGGTATGGAAGTTATGCACGAGCGCAATGCTCACAACTTCCCACTTGAC 163362 ||||| | | | || ||||| || |||||||| || |||||||| ||||| || ||||| Sbjct 41499 CGTGCCGATCTTGGAATGGAGGTCATGCACGAACGTAATGCTCATAACTTTCCTCTTGAT 41558 Query 163363 CTGGCAGCTGCCGAG 163377 |||| ||| |||| Sbjct 41559 TTGGCTTCTGGCGAG 41573 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557576340189800