Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_015286.1 Length=175230 Score E Sequences producing significant alignments: (Bits) Value seq217 565 3e-156 >seq217 Length=78499 Score = 565 bits (626), Expect = 3e-156 Identities = 723/1000 (72%), Gaps = 6/1000 (1%) Strand=Plus/Plus Query 167079 TGGGAATCCTTTTGCGATTGGGTTACCAGCACTAACAACCGTCTGTATGTCGGTTGGTTC 167138 |||||| || | | | ||| | || ||||| ||||||| || || ||||||||||| Sbjct 40572 TGGGAAAAATTCTCCAACTGGATCACAAGCACCGACAACCGCCTTTACATCGGTTGGTTC 40631 Query 167139 GGCGTTCTGATGATCCCTACGTTGCTTGCAGCAACCATC-TGTTTCATCATCGCCTTCGT 167197 || | | ||| |||| || | ||||| || | |||| || ||||| | || || | Sbjct 40632 GGTACTATCATGTTCCCAACTCTTCTTGCCGC-AGCATCATGCTTCATTACTGCATTTAT 40690 Query 167198 CGGTGCTCCTCCTGTGGACATCGATGGTATCCGCGAACCAGTTGCTGGTTCACTCATGTA 167257 | || |||||||||||||| || || ||||||||||| ||||| || || || | || Sbjct 40691 TGCCGCACCTCCTGTGGACATTGACGGAATCCGCGAACCTGTTGCCGGATCTCTTCTTTA 40750 Query 167258 TGGTAACAACATCATCTCTGGTGCAGTTGTTCCTTCTTCTAATGCTATTGGTCTTCACTT 167317 ||||| ||||||||| | || | || | ||||||| || || || || | ||||| Sbjct 40751 CGGTAATAACATCATCACCGGGTCTGTCATCCCTTCTTMCAACGCAATCGGGATGCACTT 40810 Query 167318 CTATCCCATCTGGGAAGCAGCAACCCTCGACGAGTGGTTGTACAATGGTGGTCCTTTCCA 167377 ||| ||| | |||||||| || || | ||||| ||||||||||| || || || | ||| Sbjct 40811 CTACCCCGTTTGGGAAGCTGCCTCCATGGACGAATGGTTGTACAACGGAGGACCCTACCA 40870 Query 167378 ACTCGTAGTTTTCCACTTCCTGATTGGCATCTATGCCTATATGGGTCGTGAGTGGGAACT 167437 | | || || | |||||||| | || | | | || ||||| |||||||||||||| Sbjct 40871 ATTGGTTGTGATGCACTTCCTTCTCGGAGTTGCTTCGTACATGGGCCGTGAGTGGGAACT 40930 Query 167438 CTCTTACCGTCTCGGTATGCGTCCCTGGATCTGTGTTGCATACTCTGCTCCAGTCGCTGC 167497 || || || ||||| |||||||| ||||| | |||||||| ||| || || || || || Sbjct 40931 TTCGTATCGCCTCGGAATGCGTCCTTGGATTTTTGTTGCATTCTCCGCACCTGTTGCAGC 40990 Query 167498 AGCATCTGCTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCGATGCC 167557 || | ||||| |||||| ||| || | || ||||| |||||| || | ||||| Sbjct 40991 CGCCACCGCTGTCTTCCTCACCTACCCCATTGGGCAAGGAAGTTTCTCAGATGGCATGCC 41050 Query 167558 TCTTGGTATCTCTGGTACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCT 167617 |||||||||| || || ||||||| |||| | |||||||| || |||||||||||||| Sbjct 41051 TCTTGGTATCAGCGGAACCTTCAACTTCATGTTGGTCTTCCAGGCCGAGCACAACATCCT 41110 Query 167618 GATGCACCCCTTCCATATGCTCGGCGTTGCTGGCGTATTCGGCGGTTCTCTGTTCAGTGC 167677 |||||||| | |||||| ||| ||||| || || ||||| || ||| ||||| || Sbjct 41111 TATGCACCCGCTTCATATGGCCGGAGTTGCAGGTGTCTTCGGAGGATCTTTGTTCTCCGC 41170 Query 167678 AATGCACGGTTCTCTGGTTACCTCTTCGCTGGTTCGTGAAACCACCGAAACTGAGTCCCA 167737 |||||||| ||||| ||||| || || || | |||||||||||||||| || ||| Sbjct 41171 CATGCACGGGTCTCTTGTTACTTCCTCTTTGATCCGTGAAACCACCGAAAACGAATCCAC 41230 Query 167738 GAACTATGGTTACAAGTTCGGTCAGGAAGAAGAGACGTATAACATCGTCGCTGCTCATGG 167797 || | || |||||||| || |||||||| || || || ||||| ||||| ||||| || Sbjct 41231 CAATAACGGATACAAGTTTGGCCAGGAAGAGGAAACCTACAACATTGTCGCCGCTCACGG 41290 Query 167798 TTACTTCGGTCGCCTGATCTTCCAATACGCATCCTTCAACAACTCCCGCTCGCTGCACTT 167857 ||||| || || || |||||||||||||| || ||||||||||| || | || ||||| Sbjct 41291 GTACTTTGGACGTCTCATCTTCCAATACGCGTCGTTCAACAACTCGCGTGCTCTTCACTT 41350 Query 167858 CTTCTTGGCAGCATGGCCTGTTGTTGGTATCTGGTNNNNNNNNNNNNNNNNNNNNNNNNN 167917 |||||| || |||||||| | |||||||||| Sbjct 41351 CTTCTTAGCTCTCTGGCCTGTATTGGGTATCTGGTGCACCGCCATGGGTGTCTCCACCAT 41410 Query 167918 NNNATTCAACCTGAACGGTTTCAACTTCAACCAGTCTATCCTTGATAGTTC-TGGTAAG- 167975 |||||||| ||||| ||||||||||||||| || || | | | | | || | | Sbjct 41411 GGCCTTCAACCTCAACGGATTCAACTTCAACCAGGCTGTCATCG--ACTCCGAGGGACGT 41468 Query 167976 GTTCTGCCTACTTGGGCAGACGTGCTCAACCGTGCTGGTCTGGGTATGGAAGTTATGCAC 168035 || | || ||||| ||| | |||||||||| | ||| || ||||| || |||||| Sbjct 41469 GTCATCAACACCTGGGCCGACATAATCAACCGTGCCGATCTTGGAATGGAGGTCATGCAC 41528 Query 168036 GAGCGTAATGCTCACAACTTCCCTCTCGACCTTGCTGCTG 168075 || ||||||||||| ||||| ||||| || | ||| ||| Sbjct 41529 GAACGTAATGCTCATAACTTTCCTCTTGATTTGGCTTCTG 41568 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 560600298647600