Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_015287.1 Length=232878 Score E Sequences producing significant alignments: (Bits) Value seq217 551 8e-152 >seq217 Length=78499 Score = 551 bits (610), Expect = 8e-152 Identities = 702/967 (73%), Gaps = 0/967 (0%) Strand=Plus/Plus Query 215315 ACTGACAATCGTATCTACGTTGGTTGGTTTGGTGTCCTCATGATTCCTTGCCTCCTCGCA 215374 || ||||| || | ||| | |||||||| ||| ||||| | || || || || Sbjct 40602 ACCGACAACCGCCTTTACATCGGTTGGTTCGGTACTATCATGTTCCCAACTCTTCTTGCC 40661 Query 215375 GCTACCACTTGTTTCATCGTAGCATTCATCGCTGCACCTCCTGTCGATATCGACGGAATC 215434 || | | || ||||| ||||| || || ||||||||||| || || ||||||||| Sbjct 40662 GCAGCATCATGCTTCATTACTGCATTTATTGCCGCACCTCCTGTGGACATTGACGGAATC 40721 Query 215435 AGAGAGCCAGTTGCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTA 215494 | || || ||||| || ||| | | || ||||| ||||||||| | || |||| | Sbjct 40722 CGCGAACCTGTTGCCGGATCTCTTCTTTACGGTAATAACATCATCACCGGGTCTGTCATC 40781 Query 215495 CCTAGTTCAAACGCAATCGGATTACACTTCTACCCTATCTGGGAAGCAGCAACAGTTGAC 215554 ||| || ||||||||||| | ||||||||||| | |||||||| || | | ||| Sbjct 40782 CCTTCTTMCAACGCAATCGGGATGCACTTCTACCCCGTTTGGGAAGCTGCCTCCATGGAC 40841 Query 215555 GAATGGCTCTACAATGGTGGACCTTTCCAACTGGTTATCTTCCACTTCCTCATTGGTATT 215614 |||||| | ||||| || ||||| | |||| ||||| | | |||||||| | || || Sbjct 40842 GAATGGTTGTACAACGGAGGACCCTACCAATTGGTTGTGATGCACTTCCTTCTCGGAGTT 40901 Query 215615 TCTGCATACTGCGGAAGACAGTGGGAACTTTCTTACAGATTAGGTATGAGACCTTGGATC 215674 || | ||| || | ||||||||||||| || | | || ||| | |||||||| Sbjct 40902 GCTTCGTACATGGGCCGTGAGTGGGAACTTTCGTATCGCCTCGGAATGCGTCCTTGGATT 40961 Query 215675 TGTGTTGCTTACTCCGCACCTGTATCTGCTGCCTTTGCAGTATTCCTTGTGTATCCATTC 215734 | |||||| | |||||||||||| | || ||| || || ||||| || || | Sbjct 40962 TTTGTTGCATTCTCCGCACCTGTTGCAGCCGCCACCGCTGTCTTCCTCACCTACCCCATT 41021 Query 215735 GGTCAGGGTTCTTTCTCTGATGCTATGCCACTTGGAATCTCTGGAACATTCAACTACATG 215794 || || || |||||| |||| ||||| ||||| ||| ||||| ||||||| |||| Sbjct 41022 GGGCAAGGAAGTTTCTCAGATGGCATGCCTCTTGGTATCAGCGGAACCTTCAACTTCATG 41081 Query 215795 TTTGTTTTCCAGGCTGAGCACAACATTCTGATGCACCCATTCCACATGTTAGGTGTGGCT 215854 || || |||||||| ||||||||||| || |||||||| | || ||| || || || Sbjct 41082 TTGGTCTTCCAGGCCGAGCACAACATCCTTATGCACCCGCTTCATATGGCCGGAGTTGCA 41141 Query 215855 GGTGTCTTCGGTGGTTCATTGTTCTCTGCAATGCACGGTTCACTTGTTACATCTTCTCTA 215914 ||||||||||| || || |||||||| || |||||||| || |||||||| || ||| | Sbjct 41142 GGTGTCTTCGGAGGATCTTTGTTCTCCGCCATGCACGGGTCTCTTGTTACTTCCTCTTTG 41201 Query 215915 ATCAGAGAGACAACTGAGCAAGAATCTCAGAACTACGGTTACAAGTTCGGACAAGAGGAG 215974 ||| | || || || || | ||||| || |||| |||||||| || || || ||| Sbjct 41202 ATCCGTGAAACCACCGAAAACGAATCCACCAATAACGGATACAAGTTTGGCCAGGAAGAG 41261 Query 215975 GAAACATACAACATCGTAGCTGCACACGGTTACTTTGGTCGCCTCATCTTCCAATACGCA 216034 ||||| |||||||| || || || ||||| |||||||| || ||||||||||||||||| Sbjct 41262 GAAACCTACAACATTGTCGCCGCTCACGGGTACTTTGGACGTCTCATCTTCCAATACGCG 41321 Query 216035 TCTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCTGTTATTTGTATC 216094 || ||||||||||| | ||||||||||||| | || | ||||| | ||||| Sbjct 41322 TCGTTCAACAACTCGCGTGCTCTTCACTTCTTCTTAGCTCTCTGGCCTGTATTGGGTATC 41381 Query 216095 TGGGCAACTGCAATGGGTGTCTCAACTATGGCGTTCAACCTTAACGGTTTCAACTTCAAC 216154 ||| || || ||||||||||| || ||||| |||||||| ||||| |||||||||||| Sbjct 41382 TGGTGCACCGCCATGGGTGTCTCCACCATGGCCTTCAACCTCAACGGATTCAACTTCAAC 41441 Query 216155 CAGTCTGTCGTAGACGCATCTGGTAAAGTTATTCCTACTTGGGCAGACGTTCTTAACAGA 216214 ||| ||||| | ||| | || || || || ||||| ||| | | ||| | Sbjct 41442 CAGGCTGTCATCGACTCCGAGGGACGTGTCATCAACACCTGGGCCGACATAATCAACCGT 41501 Query 216215 GCAGGACTTGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCCCATTAGACTTG 216274 || | ||||| ||||| || |||||||| ||||| ||||| ||||| || | || ||| Sbjct 41502 GCCGATCTTGGAATGGAGGTCATGCACGAACGTAATGCTCATAACTTTCCTCTTGATTTG 41561 Query 216275 GCTGCTG 216281 ||| ||| Sbjct 41562 GCTTCTG 41568 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 745071364441520