Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_015288.1 Length=191195 Score E Sequences producing significant alignments: (Bits) Value seq217 625 4e-174 >seq217 Length=78499 Score = 625 bits (692), Expect = 4e-174 Identities = 742/1002 (74%), Gaps = 6/1002 (1%) Strand=Plus/Plus Query 181783 CGTGGGAACAATTCTGCGAGTGGGTTACATCTACCAACAATCGTCTCTATGTCGGTTGGT 181842 |||||||| |||||| | | ||| | ||| ||| |||| || || || ||||||||| Sbjct 40570 CGTGGGAAAAATTCTCCAACTGGATCACAAGCACCGACAACCGCCTTTACATCGGTTGGT 40629 Query 181843 TTGGTGTGCTGATGATCCCAACTCTGTTGGCGGCAACCATC-TGTTTCATCGTTGCTTTC 181901 | ||| | ||| |||||||||| | || ||| | ||| || ||||| ||| || Sbjct 40630 TCGGTACTATCATGTTCCCAACTCTTCTTGCCGCAGC-ATCATGCTTCATTACTGCATTT 40688 Query 181902 GTAGCAGCACCTCCTGTCGATATCGACGGTATCCGCGAACCCGTAGCTGGTTCACTCATG 181961 | || ||||||||||| || || ||||| ||||||||||| || || || || || | Sbjct 40689 ATTGCCGCACCTCCTGTGGACATTGACGGAATCCGCGAACCTGTTGCCGGATCTCTTCTT 40748 Query 181962 TATGGTAACAACATCATCTCTGGTGCTGTTGTCCCATCCTCCAACGCAATTGGTCTTCAC 182021 || ||||| ||||||||| | || |||| |||| || | ||||||||| || | ||| Sbjct 40749 TACGGTAATAACATCATCACCGGGTCTGTCATCCCTTCTTMCAACGCAATCGGGATGCAC 40808 Query 182022 TTCTACCCAATCTGGGAAGCTGCCTCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTC 182081 |||||||| | |||||||||||||| | || || ||| |||| ||||| || || | | Sbjct 40809 TTCTACCCCGTTTGGGAAGCTGCCTCCATGGACGAATGGTTGTACAACGGAGGACCCTAC 40868 Query 182082 CAACTGGTTGTTTTCCACTTCCTGATCGGCAT--CTACGCCTACATGGGACGTGAGTGGG 182139 ||| ||||||| | |||||||| |||| | || || |||||||| |||||||||| Sbjct 40869 CAATTGGTTGTGATGCACTTCCTTCTCGGAGTTGCTTCG--TACATGGGCCGTGAGTGGG 40926 Query 182140 AACTTTCTTACCGCTTAGGTATGCGTCCCTGGATCTGTGTAGCATACTCTGCTCCAGTCG 182199 ||||||| || ||| | || |||||||| ||||| | ||| |||| ||| || || || | Sbjct 40927 AACTTTCGTATCGCCTCGGAATGCGTCCTTGGATTTTTGTTGCATTCTCCGCACCTGTTG 40986 Query 182200 CTGCAGCATCTGCTGTATTCTTAGTCTATCCTTTCGGTCAAGGTTCGTTCTCCGATGCAA 182259 | || || | ||||| ||| | ||| || | || ||||| ||||| |||| | Sbjct 40987 CAGCCGCCACCGCTGTCTTCCTCACCTACCCCATTGGGCAAGGAAGTTTCTCAGATGGCA 41046 Query 182260 TGCCCCTCGGAATCTCAGGAACATTCAACTATATGTTGGTTTTCCAAGCTGAGCACAACA 182319 |||| || || ||| ||||| ||||||| |||||||| ||||| || |||||||||| Sbjct 41047 TGCCTCTTGGTATCAGCGGAACCTTCAACTTCATGTTGGTCTTCCAGGCCGAGCACAACA 41106 Query 182320 TTCTTATGCATCCCTTCCACATGTTGGGTGTAGCAGGTGTATTCGGTGGTTCACTGTTTA 182379 | |||||||| || | || ||| || || |||||||| ||||| || || |||| Sbjct 41107 TCCTTATGCACCCGCTTCATATGGCCGGAGTTGCAGGTGTCTTCGGAGGATCTTTGTTCT 41166 Query 182380 GTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGTCCGTGAGACGACTGAGCAAGAGT 182439 || |||||||| ||| | ||||| || || | ||||||| || || || | || | Sbjct 41167 CCGCCATGCACGGGTCTCTTGTTACTTCCTCTTTGATCCGTGAAACCACCGAAAACGAAT 41226 Query 182440 CACAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACCTATAACATCGTTGCAGCCC 182499 | || | || |||||||| || || ||||| || ||||| ||||| || || || | Sbjct 41227 CCACCAATAACGGATACAAGTTTGGCCAGGAAGAGGAAACCTACAACATTGTCGCCGCTC 41286 Query 182500 ATGGCTACTTCGGTCGTTTGATCTTCCAATACGCATCATTCAACAACTCCCGTTCCTTGC 182559 | || ||||| || ||| | |||||||||||||| || ||||||||||| ||| | | | Sbjct 41287 ACGGGTACTTTGGACGTCTCATCTTCCAATACGCGTCGTTCAACAACTCGCGTGCTCTTC 41346 Query 182560 ACTTCTTCCTTGCTGCATGGCCTGTTGTTGGAATCTGGTTCACCGCACTTGGTGTCTCCA 182619 |||||||| | ||| |||||||| | || ||||||| |||||| | |||||||||| Sbjct 41347 ACTTCTTCTTAGCTCTCTGGCCTGTATTGGGTATCTGGTGCACCGCCATGGGTGTCTCCA 41406 Query 182620 CGATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTC 182679 | ||||| |||||||||||||| ||||||||||||||| | || | || |||| | Sbjct 41407 CCATGGCCTTCAACCTCAACGGATTCAACTTCAACCAGGCTGTCATCGACTCCGAGGGAC 41466 Query 182680 GTGTCCTTAACACTTGGGCAGATGTATTGAACCGTGCTGGTCTTGGTATGGAAGTTATGC 182739 ||||| | ||||| ||||| || || | |||||||| | |||||| ||||| || |||| Sbjct 41467 GTGTCATCAACACCTGGGCCGACATAATCAACCGTGCCGATCTTGGAATGGAGGTCATGC 41526 Query 182740 ATGAGCGTAACGCACACAACTTCCCACTAGATCTTGCTGCTG 182781 | || ||||| || || ||||| || || ||| | ||| ||| Sbjct 41527 ACGAACGTAATGCTCATAACTTTCCTCTTGATTTGGCTTCTG 41568 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611687596826200