Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_015289.1 Length=176184 Score E Sequences producing significant alignments: (Bits) Value seq217 711 0.0 >seq217 Length=78499 Score = 711 bits (788), Expect = 0.0 Identities = 770/1015 (76%), Gaps = 7/1015 (1%) Strand=Plus/Plus Query 164784 CACCAATAACCGTCTTTATGTCGGTTGGTTCGGTGTTCTTATGATCCCCTGTTTGCTCGC 164843 |||| | ||||| ||||| |||||||||||||| | | ||| |||| | | || || Sbjct 40601 CACCGACAACCGCCTTTACATCGGTTGGTTCGGTACTATCATGTTCCCAACTCTTCTTGC 40660 Query 164844 CGCTACAATTTGTTTTATTACTGCATTCATCGCTGCTCCCCCTGTGGACATTGATGGTAT 164903 ||| || || || ||||||||||| || || || || |||||||||||||| || || Sbjct 40661 CGCAGCATCATGCTTCATTACTGCATTTATTGCCGCACCTCCTGTGGACATTGACGGAAT 40720 Query 164904 TCGTGAACCTGTCGCAGGTTCTCTAATGTACGGTAACAACATCATCTCTGGTGCTGTCGT 164963 || |||||||| || || ||||| | |||||||| ||||||||| | || ||||| | Sbjct 40721 CCGCGAACCTGTTGCCGGATCTCTTCTTTACGGTAATAACATCATCACCGGGTCTGTCAT 40780 Query 164964 TCCGTCTTCTAACGCAATCGGACTTCACTTCTATCCTATTTGGGAAGCTGCAACCATGGA 165023 || |||| ||||||||||| | |||||||| || ||||||||||||| ||||||| Sbjct 40781 CCCTTCTTMCAACGCAATCGGGATGCACTTCTACCCCGTTTGGGAAGCTGCCTCCATGGA 40840 Query 165024 TGAATGGTTGTACAACGGTGGTCCTTACCAGTTGGTTGTCTTCCACTTCCTCATCGGTGT 165083 ||||||||||||||||| || || ||||| |||||||| | |||||||| |||| || Sbjct 40841 CGAATGGTTGTACAACGGAGGACCCTACCAATTGGTTGTGATGCACTTCCTTCTCGGAGT 40900 Query 165084 AGCTTGCTACATGGGTCGTGAGTGGGAACTGTCTTACCGCCTCGGTATGCGTCCTTGGAT 165143 |||| |||||||| |||||||||||||| || || |||||||| |||||||||||||| Sbjct 40901 TGCTTCGTACATGGGCCGTGAGTGGGAACTTTCGTATCGCCTCGGAATGCGTCCTTGGAT 40960 Query 165144 TTGCGTAGCATATAGCGCACCTGTCGCTGCTGCTGCCGCAGTTTTCCTGGTCTATCCTTT 165203 || || |||| ||||||||| || || || |||| || ||||| ||| || | Sbjct 40961 TTTTGTTGCATTCTCCGCACCTGTTGCAGCCGCCACCGCTGTCTTCCTCACCTACCCCAT 41020 Query 165204 CGGTCAAGGGAGTTTCTCTGATGGTATGCCTCTTGGTATCTCTGGTACTTTTAACTATAT 165263 || ||||| |||||||| ||||| ||||||||||||||| || || || |||| || Sbjct 41021 TGGGCAAGGAAGTTTCTCAGATGGCATGCCTCTTGGTATCAGCGGAACCTTCAACTTCAT 41080 Query 165264 GTTCGTCTTCCAAGCAGAACATAACATTCTTATGCATCCGTTCCACATGCTCGGCGTTGC 165323 ||| |||||||| || || || ||||| |||||||| ||| | || ||| ||| ||||| Sbjct 41081 GTTGGTCTTCCAGGCCGAGCACAACATCCTTATGCACCCGCTTCATATGGCCGGAGTTGC 41140 Query 165324 TGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCATGGAAGTCTTGTTACTTCCTCACT 165383 || || ||||| |||||| | ||||| || ||||| || ||||||||||||||| | Sbjct 41141 AGGTGTCTTCGGAGGATCTTTGTTCTCCGCCATGCACGGGTCTCTTGTTACTTCCTCTTT 41200 Query 165384 CGTCCGCGAGACAACTGAAACAGAGAGTCA-GAACTACGGTTATAAGTTTGGACAAGAAG 165442 |||| || || || |||| || | || || |||| || |||||||| || |||| Sbjct 41201 GATCCGTGAAACCACCGAAAACGA-ATCCACCAATAACGGATACAAGTTTGGCCAGGAAG 41259 Query 165443 AAGAGACCTATAACATCGTCGCTGCCCACGGGTACTTCGGTCGTCTCATTTTCCAATACG 165502 | || ||||| ||||| ||||| || ||||||||||| || |||||||| |||||||||| Sbjct 41260 AGGAAACCTACAACATTGTCGCCGCTCACGGGTACTTTGGACGTCTCATCTTCCAATACG 41319 Query 165503 CATCCTTCAACAATTCCCGTTCGCTGCACTTCTTCCTCGCAGCATGGCCTGTAGTTGGTA 165562 | || |||||||| || ||| | || ||||||||| | || ||||||||| | |||| Sbjct 41320 CGTCGTTCAACAACTCGCGTGCTCTTCACTTCTTCTTAGCTCTCTGGCCTGTATTGGGTA 41379 Query 165563 TCTGGTTCACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTGAACGGTTTCAACTTCA 165622 |||||| ||| || | ||||| ||||||||| |||||||| ||||| |||||||||| Sbjct 41380 TCTGGTGCACCGCCATGGGTGTCTCCACCATGGCCTTCAACCTCAACGGATTCAACTTCA 41439 Query 165623 ACCAGTCTATTGTTGATAGTCAGAACAA--AATCATCCCTACTTGGGCTGACGTTCTGAA 165680 ||||| || | | | | || || | ||||| || ||||| ||| | | || Sbjct 41440 ACCAGGCTGTCATCG--ACTCCGAGGGACGTGTCATCAACACCTGGGCCGACATAATCAA 41497 Query 165681 CCGTGCTGGTCTGGGTATGGAAGTTATGCATGAGCGTAACGCTCACAACTTCCCCCTCGA 165740 |||||| | ||| || ||||| || ||||| || ||||| ||||| ||||| || || || Sbjct 41498 CCGTGCCGATCTTGGAATGGAGGTCATGCACGAACGTAATGCTCATAACTTTCCTCTTGA 41557 Query 165741 CCTCGCTGCTGCCGAGAGCACTCCTGTTGCTCTGACGGCACCCGCCATCGGTTGA 165795 | ||| ||| ||||| ||||| || || ||| || |||||| ||||| Sbjct 41558 TTTGGCTTCTGGCGAGATTCTCCCTGTCGCAATGGAGGCCCCAGCCATC-GTTGA 41611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563653056709760