Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_015290.1 Length=182180 Score E Sequences producing significant alignments: (Bits) Value seq217 536 1e-147 >seq217 Length=78499 Score = 536 bits (594), Expect = 1e-147 Identities = 713/988 (72%), Gaps = 6/988 (1%) Strand=Plus/Plus Query 169699 TGGGTAACAAGCACAAACAACCGCATCTATGTTGGTTGGTTCGGTGTCTTGATGATCCCA 169758 ||| | |||||||| |||||||| | || | |||||||||||| | ||| ||||| Sbjct 40590 TGGATCACAAGCACCGACAACCGCCTTTACATCGGTTGGTTCGGTACTATCATGTTCCCA 40649 Query 169759 TGTCTATTAGCAGCAGCAACCTGCTTTATCGTTGCTTTCATCGCAGCTCCACCTGTGGAC 169818 ||| | || |||||| | ||||| || ||| || || || || || ||||||||| Sbjct 40650 ACTCTTCTTGCCGCAGCATCATGCTTCATTACTGCATTTATTGCCGCACCTCCTGTGGAC 40709 Query 169819 ATCGATGGAATCAGAGAACCTGTAGCAGGTTCATTCATGTATGGTAACAACATCATCTCT 169878 || || |||||| | |||||||| || || || | | || ||||| ||||||||| | Sbjct 40710 ATTGACGGAATCCGCGAACCTGTTGCCGGATCTCTTCTTTACGGTAATAACATCATCACC 40769 Query 169879 GGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTCCACTTCTATCCTATTTGGGAAGCA 169938 || | || | || |||| ||||||||||| | |||||||| || |||||||||| Sbjct 40770 GGGTCTGTCATCCCTTCTTMCAACGCAATCGGGATGCACTTCTACCCCGTTTGGGAAGCT 40829 Query 169939 GCAACTCTAGATGAGTGGTTGTATAACGGTGGTCCTTATCAATTAGTTATCTTCCACTTC 169998 || | | || || |||||||| ||||| || || || ||||| ||| | | |||||| Sbjct 40830 GCCTCCATGGACGAATGGTTGTACAACGGAGGACCCTACCAATTGGTTGTGATGCACTTC 40889 Query 169999 CTTATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACCGTTTAGGTATG 170058 ||| ||||| | || | |||||||| | |||||||||| || || || | || ||| Sbjct 40890 CTTCTCGGAGTTGCTTCGTACATGGGCCGTGAGTGGGAACTTTCGTATCGCCTCGGAATG 40949 Query 170059 CGTCCTTGGATCTGTGTAGCATATTCTGCTCCAGTGTCAGCAGCATTCGCTGTATTCTTA 170118 ||||||||||| | ||| |||| || || || || |||| || |||||| ||| | Sbjct 40950 CGTCCTTGGATTTTTGTTGCATTCTCCGCACCTGTTGCAGCCGCCACCGCTGTCTTCCTC 41009 Query 170119 GTGTATCCTTTCGGTCAGGGATCTTTCTCAGACGGAATGCCTCTAGGTATCTCAGGTACA 170178 || || | || || ||| ||||||||| || |||||||| |||||| || || Sbjct 41010 ACCTACCCCATTGGGCAAGGAAGTTTCTCAGATGGCATGCCTCTTGGTATCAGCGGAACC 41069 Query 170179 TTTAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCACCCATTCCATATG 170238 || ||||||||||| || ||||| || ||||||||||| ||||||||||| | |||||| Sbjct 41070 TTCAACTTCATGTTGGTCTTCCAGGCCGAGCACAACATCCTTATGCACCCGCTTCATATG 41129 Query 170239 GCAGGGGTTGCTGGTATGTTCGGAGGAGCACTCTTCTCAGCAATGCACGGTTCACTTGTA 170298 || || ||||| ||| | ||||||||| | | ||||| || |||||||| || ||||| Sbjct 41130 GCCGGAGTTGCAGGTGTCTTCGGAGGATCTTTGTTCTCCGCCATGCACGGGTCTCTTGTT 41189 Query 170299 ACATCTTCTCTAATCAGAGAGACAACAGATAACGAGTCACAGAACTATGGATACAAATTC 170358 || || ||| | ||| | || || || || ||||| || || | |||||||| || Sbjct 41190 ACTTCCTCTTTGATCCGTGAAACCACCGAAAACGAATCCACCAATAACGGATACAAGTTT 41249 Query 170359 GGACAAGAAGAAGAAACATACAACATTGTTGCAGCACATGGATACTTTGGTAGACTTATC 170418 || || ||||| ||||| ||||||||||| || || || || |||||||| | || ||| Sbjct 41250 GGCCAGGAAGAGGAAACCTACAACATTGTCGCCGCTCACGGGTACTTTGGACGTCTCATC 41309 Query 170419 TTCCAATATGCTAGCTTTAACAATAGTCGTAGTCTTCACTTCTTCCTTGCTACATTCCCT 170478 |||||||| || || ||||| ||| ||||||||||||| | ||| | ||| Sbjct 41310 TTCCAATACGCGTCGTTCAACAACTCGCGTGCTCTTCACTTCTTCTTAGCTCTCTGGCCT 41369 Query 170479 GTAGTATGCATCTGGTTAACTTCAATGGGTATTTGCACAATGGCATTTAACCTTAATGGA 170538 ||| | | ||||||| || | |||||| | | ||| ||||| || ||||| || ||| Sbjct 41370 GTATTGGGTATCTGGTGCACCGCCATGGGTGTCTCCACCATGGCCTTCAACCTCAACGGA 41429 Query 170539 TTTAACTTCAACCAGTCAATCGTAGATGGATCTG-GTAAAGTAGTTCCTACA--TGGGCA 170595 || |||||||||||| | || | || || | | | || | ||| ||||| Sbjct 41430 TTCAACTTCAACCAGGCTGTCATCGA---CTCCGAGGGACGTGTCATCAACACCTGGGCC 41486 Query 170596 GACGTTCTTAACAGAGCAAACCTAGGTATGGAAGTAATGCATGAGCGTAATGCACACAAC 170655 ||| | | ||| | || | || || ||||| || ||||| || |||||||| || ||| Sbjct 41487 GACATAATCAACCGTGCCGATCTTGGAATGGAGGTCATGCACGAACGTAATGCTCATAAC 41546 Query 170656 TTCCCACTTGACTTGGCAACTGCTGAGA 170683 || || ||||| ||||| ||| |||| Sbjct 41547 TTTCCTCTTGATTTGGCTTCTGGCGAGA 41574 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582839993125600