Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq386 136 9e-27 seq22 107 4e-18 >seq386 Length=39556 Score = 136 bits (150), Expect = 9e-27 Identities = 147/195 (75%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||||||||| || || ||||| |||||||| ||| || || || |||||||| | || Sbjct 11409 GTGAAGAGTAGATTCCTTTTGGATATTGTAGTCGCTTAGGGTCCTTCCATCTTCCAATTG 11350 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || || || || | || || || || |||||||| ||||| ||||| || || || Sbjct 11349 CTTTCCAGCAAAAATCAATCTCTGCTGATCCGGAGGAATTCCTTCCTTGTCCTGGATCTT 11290 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 |||||| || ||||||||||||||| || || || | || | ||||| || || Sbjct 11289 GGTCTTGACATTGTCAATGGTGTCCGAAGGCTCGACATCCAACGTGATTGTCTTGCCGGT 11230 Query 195117 CAAAGTTTTTACGAA 195131 ||||||||||||||| Sbjct 11229 CAAAGTTTTTACGAA 11215 Score = 122 bits (134), Expect = 2e-22 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| ||||||||||| || ||||||||||| ||| || || || |||||||| Sbjct 11642 ACCAGGTGCAGAGTGGACTCCTTCTGAATATTGTAGTCGCTTAGGGTCCTTCCATCTTCC 11583 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 | ||||| || || || || | || || || || || || || ||||| ||||| ||| Sbjct 11582 AATTGCTTTCCAGCAAAAATCAATCTCTGCTGATCAGGTGGGATTCCTTCCTTGTCCTGA 11523 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || |||||| || ||||| ||||||||| || || || | || | |||||| Sbjct 11522 ATCTTGGTCTTGACATTGTCAATAGTGTCCGAAGGCTCGACATCCAACGTGATAGTCTTT 11463 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCATT 195141 || || | || || || || | ||||||| Sbjct 11462 CCCGTGAGGGTCTTGACAAAGATTTGCATT 11433 >seq22 Length=300247 Score = 107 bits (118), Expect = 4e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 194995 TGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATT 195054 ||||| || || ||||| | || ||| || || |||||||| ||||| ||||| ||||| Sbjct 203444 TGCTTTCCAGCAAAGATCAATCTTTGCTGATCAGGAGGAATTCCTTCCTTGTCCTGAATC 203385 Query 195055 TTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCT 195114 || |||||| || ||||||||||| ||| || || || | ||| | |||||||| Sbjct 203384 TTGGTCTTGACATTGTCAATGGTGTCGGAAGGCTCGACATCCAAGGTGATTGTCTTTCCG 203325 Query 195115 GTCAAAGTTTTTACGAA 195131 ||||| ||||||||||| Sbjct 203324 GTCAATGTTTTTACGAA 203308 Score = 87.8 bits (96), Expect = 4e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 ||||||||||| || || || || || || ||| | ||| | ||||| || | ||| Sbjct 203611 TGAAGAGTGGATTCCTTCTGGATGTTATAGTCGCTCAAAGTACGACCATCCTCCAATTGC 203552 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 || || || || ||||| || || || || |||||||| ||||| |||||||| || || Sbjct 203551 TTTCCAGCAAATATAAGACGCTGCTGATCGGGAGGAATTCCTTCCTTGTCTTGGATCTTG 203492 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGA 195083 |||||| || ||||| || || || Sbjct 203491 GTCTTGACATTATCAATCGTATCAGA 203466 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109465977458933