Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_015569.1 Length=178563 Score E Sequences producing significant alignments: (Bits) Value seq217 594 6e-165 >seq217 Length=78499 Score = 594 bits (658), Expect = 6e-165 Identities = 722/983 (73%), Gaps = 6/983 (1%) Strand=Plus/Minus Query 83985 GGGAAGTTATGTGCGTTACGTTCGTGCATCACTTCCATACCAAGCCCGGCACGATTAAGT 84044 || |||||||| || |||||||||||||| || ||||| ||||| ||||||| || | | Sbjct 41551 GGAAAGTTATGAGCATTACGTTCGTGCATGACCTCCATTCCAAGATCGGCACGGTTGATT 41492 Query 84045 ACATCGGCCCAGGTATTGACAACACGGTTTTGGCTATCGACAAGACTCTGATTGAAGTTA 84104 | ||||||||||| |||| ||||| | | |||| | | ||| |||||||| Sbjct 41491 ATGTCGGCCCAGGTGTTGATGACACGTCCCTCGGAGTCGATGACAGCCTGGTTGAAGTTG 41432 Query 84105 AATCCATTCAGATTAAATGCCATGGTGCTAACACCCAGAGCAGCAAACCAAATGCCAACC 84164 ||||| || || || || ||||||||| ||||||| || | |||| || || | Sbjct 41431 AATCCGTTGAGGTTGAAGGCCATGGTGGAGACACCCATGGCGGTGCACCAGATACCCAAT 41372 Query 84165 ACTGGCCAAGCAGCCAAGAAAAAGTGGAGAGAACGACTATTGTTGAAGGAAGCATACTGG 84224 || ||||| ||| ||||| ||||| |||| ||| |||||||| || || || ||| Sbjct 41371 ACAGGCCAGAGAGCTAAGAAGAAGTGAAGAGCACGCGAGTTGTTGAACGACGCGTATTGG 41312 Query 84225 AAGATAAGACGACCGAAGTAGCCGTGAGCAGCAACAATATTATAAGTTTCCTCTTCTTGA 84284 ||||| ||||| || ||||| |||||||| || ||||| || || ||||||||||| || Sbjct 41311 AAGATGAGACGTCCAAAGTACCCGTGAGCGGCGACAATGTTGTAGGTTTCCTCTTCCTGG 41252 Query 84285 CCGAACTTGTAACCATAGTTTTGTGAGACATTTTCTGTAGTTTCTCGGATTAGAGAAGAA 84344 || |||||||| || | || || | ||||| || ||||| ||||| | ||| ||| Sbjct 41251 CCAAACTTGTATCCGTTATTGGTGGATTCGTTTTCGGTGGTTTCACGGATCAAAGAGGAA 41192 Query 84345 GTGACAAGTGAACCATGCATTGCAGAGAATAGAGCTCCACCGAATACACCAGCAACTCCC 84404 || ||||| || || ||||| || ||||| | || ||| ||||| ||||| |||||||| Sbjct 41191 GTAACAAGAGACCCGTGCATGGCGGAGAACAAAGATCCTCCGAAGACACCTGCAACTCCG 41132 Query 84405 AACATGTGAAAGGGATGCATAAGGATGTTATGTTCCGCCTGGAAGACAAGCATGTAGTTG 84464 ||| |||| || |||||||||||||| || || ||||||||||| | |||| ||||| Sbjct 41131 GCCATATGAAGCGGGTGCATAAGGATGTTGTGCTCGGCCTGGAAGACCAACATGAAGTTG 41072 Query 84465 AACGTTCCTGAGATACCAAGTGGCATGCCATCAGAGAAAGAACCTTGCCCGAAAGGATAC 84524 || ||||| ||||||||| ||||||||||| |||||| |||||||| | || || Sbjct 41071 AAGGTTCCGCTGATACCAAGAGGCATGCCATCTGAGAAACTTCCTTGCCCAATGGGGTAG 41012 Query 84525 ACAAGGAATACAGCAGATGCCGCTGCAACTGGAGCAGAGTAAGCAACACAGATCCATGGA 84584 ||||| ||||| | || |||||||| || || ||| | |||||| | ||||| ||| Sbjct 41011 GTGAGGAAGACAGCGGTGGCGGCTGCAACAGGTGCGGAGAATGCAACAAAAATCCAAGGA 40952 Query 84585 CGCATACCGAGACGATATGAAAGTTCCCATTCACGACCCATGTA---AGCAAATGCACCA 84641 ||||| ||||| ||||| ||||||||||| ||||| |||||||| ||||| | || Sbjct 40951 CGCATTCCGAGGCGATACGAAAGTTCCCACTCACGGCCCATGTACGAAGCAACT---CCG 40895 Query 84642 ATCAGGAAGTGAAAGACAACAAGTTGATAAGGTCCACCATTATATAGCCATTCGTCCATA 84701 | |||||||| | ||||| | ||| || ||||| || || || | |||||||||||| Sbjct 40894 AGAAGGAAGTGCATCACAACCAATTGGTAGGGTCCTCCGTTGTACAACCATTCGTCCATG 40835 Query 84702 CTTGCTGCTTCCCAAATAGGATAGAAATGTAGACCAATAGCATTAGAGGATGGAACTACG 84761 || |||||||||| || ||||| || | || || || || | || || | || Sbjct 40834 GAGGCAGCTTCCCAAACGGGGTAGAAGTGCATCCCGATTGCGTTGKAAGAAGGGATGACA 40775 Query 84762 GCACCAGAAATGATGTTGTTTCCGTACATGAGAGAACCAGCGACTGGCTCACGGATACCG 84821 | || | |||||||| || ||||| | ||||| || || || || || ||||| ||| Sbjct 40774 GACCCGGTGATGATGTTATTACCGTAAAGAAGAGATCCGGCAACAGGTTCGCGGATTCCG 40715 Query 84822 TCAATATCAACTGGGGGTGCACCAACGAATGCAATGATGAAACAGACAGTGGCAGCAAGT 84881 ||||| || || || ||||| ||| |||||| | ||||| || | || ||||| Sbjct 40714 TCAATGTCCACAGGAGGTGCGGCAATAAATGCAGTAATGAAGCATGATGCTGCGGCAAGA 40655 Query 84882 AGAGTTGGAATCATAAGAGTTCCAAACCAACCAACATAGATACGGTTGTTAGTGGAGGTG 84941 |||||||| | ||| | ||| || |||||||| | || | ||||||| ||| ||| Sbjct 40654 AGAGTTGGGAACATGATAGTACCGAACCAACCGATGTAAAGGCGGTTGTCGGTGCTTGTG 40595 Query 84942 ACCCAATCACAGAAGTTCTGCCA 84964 | ||| | |||| || | ||| Sbjct 40594 ATCCAGTTGGAGAATTTTTCCCA 40572 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571265752128920