Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq3 143 3e-29 >seq3 Length=497493 Score = 143 bits (158), Expect = 3e-29 Identities = 492/763 (64%), Gaps = 26/763 (3%) Strand=Plus/Minus Query 47888 TGCTAGATTACATACAGCTACCTCATTTGGATTAGTATATTGTATTATTTCAGCACATAG 47947 ||| ||||| |||||||| ||||| | | | |||||||| || ||||| | ||||| Sbjct 139838 TGCAAGATTGCATACAGCAACCTCTTCTTCGTCCGTATATTGGATAATTTCTGTGCATAG 139779 Query 47948 ATTACCACATTTGATAGTACCCAAATTTTGATGATTATTNNNNTTGTTACATGCGTCCTT 48007 ||||| |||| || || || | ||| | || ||| | | ||| || ||||| Sbjct 139778 ATTACTGCATTGAATTGTTCCAATATTCTTTTGGTTACTTTTTTCATTAGCGGCATCCTT 139719 Query 48008 GTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGATTTCCAAACAGT 48067 || ||||| |||| ||||| ||||| || || ||||| | || || | || Sbjct 139718 ATATAGCATGTAAGGAGTTCCTGTTTCGATTTGGGATTCCA-----GAATTGCGGAC--- 139667 Query 48068 CCTAGCCTTTATAACAGC--TCTAGCTT---TATTATCATG----TTCGTATTTAGTATA 48118 | || ||| | ||| ||| || |||| || | ||||||||| ||| Sbjct 139666 CATA-CCTCTCGGGCAGGCATCTGGCGAACATATTTTCCTTCTTTTTCGTATTTTTCATA 139608 Query 48119 TAACTTCTCAAATTCATCCCCA-TACACATTATCT---AACCCAGGACATTCATTAGGAC 48174 || | |||||| || | || | ||| ||| | ||||| |||| || |||| Sbjct 139607 TAGTTCCTCAAAYTCTTTTCCGCTGCAC----TCTGGGAGGCCAGGGCATTGATCGGGAC 139552 Query 48175 ACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAA 48234 |||||| ||| | ||||| || | ||||| ||||||| | ||| || ||||| | Sbjct 139551 ACATCAGACTCCAGTTTTCATCGTTCTCTACTCGTTTCATAAACAAATCAGGGATCCATA 139492 Query 48235 GAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAA 48294 | | ||||| ||| | || || ||||||| || || ||| |||| || | || Sbjct 139491 GGCCGTAAAATAGATCTCGAGCTCGCTGTTCTTCTTTCCCGTGGTTCTTTTTCAGATTAA 139432 Query 48295 GAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTT 48354 ||| ||| | || || | |||||| ||||| | || | || | | |||| || || | Sbjct 139431 GAACGTCGAAAATGTCCGAATGCCAGGGTTCAATGTAAACAGCAAATGCACCAGGCCGCT 139372 Query 48355 TATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAA 48414 | |||||||||||| | ||||| || || | ||||| | | ||| || || | Sbjct 139371 TTCCACCTCCTTGATCAACGTATCTCGCTGTCACATCGTAAACGCGAAGCATAGGAACCA 139312 Query 48415 TACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAA 48474 ||||| || |||| || ||| || | || ||||||| ||||| | Sbjct 139311 GTCCATTGGAAGTACCTCGTGTACCCTTGATGGGAGACCCCCTAGCTCGAATATTGTGCA 139252 Query 48475 TTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCAT 48534 | || || ||||| || ||| ||||| | ||| || || || | ||||||| Sbjct 139251 CGCTCAATCCAATTCCACCAGCAGATTTGGATATGACAGCGCATCGCTTTAATGTATCAT 139192 Query 48535 AAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGAT 48594 | || || || ||| || |||| | | | |||||||| || | || |||| Sbjct 139191 ATATGCCCGAAATTGAATCGTCACTCATTTGAACCAAGAAACAACTCGATAGCTGAGGAT 139132 Query 48595 GACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAA 48637 || ||||| |||| ||||| ||| ||||||||||| |||| Sbjct 139131 GAGTCGTTCCAGAATGAAATAGTGTAGGAGATGCATGGGTAAA 139089 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562101078030360