Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq21 167 2e-35 seq386 107 2e-17 seq2 91.5 1e-12 >seq21 Length=285816 Score = 167 bits (184), Expect = 2e-35 Identities = 397/592 (67%), Gaps = 16/592 (3%) Strand=Plus/Minus Query 549998 GGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAA 550057 || || ||| | |||||||| || ||||| |||||||||||||||| || ||| Sbjct 159401 GGAATTGATCTTGGAACCACCTACTCGTGTGTCGGTGTTTGGCAAAATGACCGTGTCGAA 159342 Query 550058 ATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAACT 550117 || |||||||| || ||||||||| | ||||| || ||||||||| | ||||| || || Sbjct 159341 ATCATTGCCAACGACCAAGGTAACCGTACTACCCCTTCTTATGTTGCCTTCACTGAGACC 159282 Query 550118 GAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATACTATT 550177 || | | | |||| ||||| || || | ||| ||| | ||| | || || | Sbjct 159281 GAGCGTCTTATTGGAGATGCTGCCAAGTCTCAGGCCGCCATGAATGCCGATAACACCGTC 159222 Query 550178 TTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGATATG 550237 || || || || || || || ||| | | || | |||| | | || || || || ||| Sbjct 159221 TTCGACGCCAAGCGATTGATCGGACGCAAATTCACTGATGCCGCCGTCCAAGCTGACATG 159162 Query 550238 AAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGA--AAACCTTATATTGAAG--CTAC 550293 ||||| ||||||||| | || | | | ||| | || || | ||| | | Sbjct 159161 AAGCACTGGCCTTTCGGAGTTATCTCCGGACCCGGAGGTACCCCCATCATCAAGGTCGAG 159102 Query 550294 T--CATGAAGGATCTGTTAAACAATTTTCA-CCAGAACAAATTTCATCTATGGTTTTAAT 550350 | | | || ||| || | || | | ||| |||| || |||||| | | Sbjct 159101 TACAAGGGAGAATC----CAAGACCTTCAAGGCCGAAGAAATCAGTTCCATGGTTCTTAC 159046 Query 550351 GAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAA-GAAGTTACGGATGCAGTAATAA 550409 ||| ||||| | | ||| | | | |||| ||| ||||| | | | || || | | Sbjct 159045 GAAGATGAAGGACATTGCC-GAGGCATACTTGGGCAAGGAAGTCAAGAACGCTGTTGTCA 158987 Query 550410 CTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTG 550469 | ||||| || || || || ||||| || ||||||||||| || ||||| ||| ||| Sbjct 158986 CCGTACCTGCTTACTTCAACGACTCTCAGCGTCAAGCTACCAAGGATGCCGGATCCATTT 158927 Query 550470 CTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGAC 550529 | |||||||||||||||||||||||||| |||||||| || ||||| | || || ||| Sbjct 158926 CCGGACTTAATGTTCTTCGTATTATCAACGAACCTACCGCCGCTGCCATCGCCTACGGAT 158867 Query 550530 TTGATAAACATAATGATCAAGAACTTAATGTACTCATCTTTGATTGTGGAGG 550581 | || | | || | | ||| ||||| ||||| || ||| |||||| Sbjct 158866 TGGACA---AGAAGGGAGACGAAAAGAATGTCCTCATTTTCGATCTTGGAGG 158818 Score = 105 bits (116), Expect = 5e-17 Identities = 445/695 (64%), Gaps = 11/695 (2%) Strand=Plus/Minus Query 551896 CTCTTCGTCGTCTAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACTC 551955 |||| |||||||| | || ||||||||| | ||||| || ||||||| || ||||| Sbjct 158647 CTCTCCGTCGTCTTCGTACCGCTTGCGAACGTGCCAAGCGTACTCTTTCTTCCTCTACTC 158588 Query 551956 AAACCACTATTGAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCGA 552015 | || |||||| | || || | ||||| || || |||| ||| | | || | Sbjct 158587 AGGCCCACATTGAAATTGACTCCCTCTTTGACGGTATCGATTTCAATGCCACCATCACCC 158528 Query 552016 GGGCCAAATTTGAAGATATTTGTTC-TGATCT-CTTTAGAAAAACAATTGAACCAGTAGA 552073 | ||| || || || ||| | || || ||| | || || || || || Sbjct 158527 GTGCCCGTTTCGAGGAC--TTGAACATGGACTACTTCAAGAAGTGCATGGAGCCCTGCGA 158470 Query 552074 ACAAGTTTTAAGAGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGG 552133 | | ||||| |||||| | ||||| || || ||| ||||||| || |||||||| Sbjct 158469 AAAGGTTTTGAGAGATGCCAAGATCTCCAAGGCCGGAGTTGATGAAATCGTCCTTGTTGG 158410 Query 552134 TGGATCTACAAGAATTCCTAAAATTCGCGAAATGTTAAGTTCTTATTTCAATGGTAAAAA 552193 ||||| || | || || || || | ||| | | | | ||||| || || | Sbjct 158409 AGGATCCACCCGTATCCCCAAGATCCAGACCATGCTCACTGAGTTCTTCAACGGAAAGGA 158350 Query 552194 ATTAAATGAAAGTGTT--AATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCA 552251 | | || |||| | || || ||||| || ||||| | || ||| | | || || Sbjct 158349 ACTC--TGCAAGTCTATCAACCCCGATGAAGCCGTTGCATTCGGAGCCACCGTCCAGGCC 158292 Query 552252 GCTATTCTTTCTGGA-CAAACTGAT--GAAAAACTACAAAATATTGTACTTGTAGATGTT 552308 ||||| | ||| | || | ||||| || | || | || | ||||| Sbjct 158291 GCTATCTTGAGCGGATCCGACAAGTCCGAAAAGCTTTCCGAACTTCTCCTGTTGGATGTC 158232 Query 552309 ACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGA 552368 |||||||| || |||||| | ||||| | ||||| | ||||||| || ||| | ||| Sbjct 158231 ACTCCTCTTTCCCTTGGTCTCGAAACCGCAGGAGGAGTCATGACTACCCTCATCAAGAGA 158172 Query 552369 AATACTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACT 552428 || ||||| ||||| || || | | || ||||| || | || || ||| | Sbjct 158171 AACACTACCGTTCCTGCCAAGAAGACCCAGACCTTCTCTACCTACGCCGACAACCAACCC 158112 Query 552429 GCTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTT 552488 | |||| || || | || ||||||||| | | || || || || ||| || Sbjct 158111 GGTGTTCTTATCCAGGTCTTCGAAGGAGAACGTTCGATGACCAAGGACAACAATATCCTC 158052 Query 552489 GGTACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTT 552548 || | || || | || || || |||||| |||||||| ||| |||||||| || Sbjct 158051 GGAAAGTTCAACCTCGACGGAATCCCTCCTATGCCTCGTGGGCAACCACAAATTGATGTC 157992 Query 552549 ACTTTCGATATCGATGCCAATGGAATTTTGAATGT 552583 ||||| || ||||||||||| || ||||| || Sbjct 157991 TGCTTCGACATTGATGCCAATGGTATCTTGAACGT 157957 >seq386 Length=39556 Score = 107 bits (118), Expect = 2e-17 Identities = 159/221 (72%), Gaps = 6/221 (3%) Strand=Plus/Minus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTC--TTTGGTAATATTGTAATCAGCTAGAGTTC 563314 |||||||| || | ||||||||| ||| ||||| || ||||| ||| | || | Sbjct 12107 AGACGGAGAACCAAGTGAAGGGTAGATTCCTTTTGG--ATGTTGTAGTCACTCAAGGTGC 12050 Query 563315 TTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTT 563374 ||||| ||||| ||||| ||||| ||||| | |||||||||||||||||||||| Sbjct 12049 GGCCGTCTTCCAGTTGCTTTCCAGCAAAGATAAGACGCTGCTGATCAGGAGGAATTCCTT 11990 Query 563375 CTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGA 563433 | || || || || || || || ||||| ||||||| || | || || || Sbjct 11989 CCTTGTCCTGGATCTTGGTCTTCACGTTGTCAATGGTATCAG-ATGGTTCCACATCCAGT 11931 Query 563434 GTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 |||| ||| |||||||| || || || || || |||||||| Sbjct 11930 GTAATAGTCTTACCAGTGAGCGTCTTCACAAAGATTTGCAT 11890 Score = 91.5 bits (100), Expect = 1e-12 Identities = 103/136 (76%), Gaps = 4/136 (3%) Strand=Plus/Minus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTC--TTTGGTAATATTGTAATCAGCTAGAGTTC 563314 ||||| || || | ||||| ||| ||| ||||| |||||||| || ||| || | Sbjct 11423 AGACGAAGCACTAAGTGAAGAGTAGATTCCTTTTGG--ATATTGTAGTCGCTTAGGGTCC 11366 Query 563315 TTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTT 563374 || |||||| | ||| ||||| |||||||| | ||| |||||||| ||||||||||||| Sbjct 11365 TTCCATCTTCCAATTGCTTTCCAGCAAAAATCAATCTCTGCTGATCCGGAGGAATTCCTT 11306 Query 563375 CTTTATCTTGAATTTT 563390 | || || || || || Sbjct 11305 CCTTGTCCTGGATCTT 11290 >seq2 Length=515016 Score = 91.5 bits (100), Expect = 1e-12 Identities = 94/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 429289 ACGTACATTCAATGGTTTTCCCTTAAGTGGAAATACGCCATAATAATCTCGACCAATAAC 429348 ||| ||||||| || ||||| || | ||| | || ||||| |||| || ||||| || Sbjct 47169 ACGAACATTCAGGGGCTTTCCTTTTAAAGGATAAACTCCATAGAAATCGCGTCCAATGAC 47228 Query 429349 ATTTAGTCCAGACATTGCAAAAGTTTTAGCTGAATCTCCTTCCGTCAAAATAAGTGTACA 429408 | || ||||||||||| || | ||| || ||||||||||| || | |||||||||||| Sbjct 47229 AGAAAGACCAGACATTGCCAACGATTTGGCCGAATCTCCTTCTGTTAGAATAAGTGTACA 47288 Query 429409 TTT 429411 || Sbjct 47289 CTT 47291 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029237879923510