Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_016656.1 Length=45890 Score E Sequences producing significant alignments: (Bits) Value seq217 365 1e-96 >seq217 Length=78499 Score = 365 bits (404), Expect = 1e-96 Identities = 669/978 (68%), Gaps = 2/978 (0%) Strand=Plus/Plus Query 25811 TGGGTTACAAGTACTGAGAACCGTCTCTATGTGGGATGGTTCGGGGTGCTTATGATACCC 25870 ||| | ||||| || || ||||| || || | || |||||||| | ||| | ||| Sbjct 40590 TGGATCACAAGCACCGACAACCGCCTTTACATCGGTTGGTTCGGTACTATCATGTT-CCC 40648 Query 25871 TGCT-TACTCGCAGCCACTACATGTTTTATACTTGCCTTCATCGCAGCACCGCCTGTAGA 25929 || | || || || | |||| || || ||| || || || ||||| ||||| || Sbjct 40649 AACTCTTCTTGCCGCAGCATCATGCTTCATTACTGCATTTATTGCCGCACCTCCTGTGGA 40708 Query 25930 TATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAATATAATATC 25989 || || || || || || || ||| |||| || | | ||||| || || || || | Sbjct 40709 CATTGACGGAATCCGCGAACCTGTTGCCGGATCTCTTCTTTACGGTAATAACATCATCAC 40768 Query 25990 AGGAGCAGTCGTCCCCTCCTCTAACGCAATCGGACTACATTTTTACCCGATCTGGGAAGC 26049 || | ||| |||| || | ||||||||||| | || || ||||| | |||||||| Sbjct 40769 CGGGTCTGTCATCCCTTCTTMCAACGCAATCGGGATGCACTTCTACCCCGTTTGGGAAGC 40828 Query 26050 TGGCACACTGGACGAGTGGCTATACAATGGCGGACCATATCAACTCATTATCTTCCACTT 26109 || | | ||||||| ||| | ||||| || ||||| || ||| | || | | ||||| Sbjct 40829 TGCCTCCATGGACGAATGGTTGTACAACGGAGGACCCTACCAATTGGTTGTGATGCACTT 40888 Query 26110 CTTAATAGGAGTAGCAGCATATGCAGGGAGACAGTGGGAACTATCTTACAGACTAGGAAT 26169 | | | ||||| || | || || | |||||||||| || || | || ||||| Sbjct 40889 CCTTCTCGGAGTTGCTTCGTACATGGGCCGTGAGTGGGAACTTTCGTATCGCCTCGGAAT 40948 Query 26170 GAGACCATGGATATTTGTTGCATATACAGCACCACTATCCGCAGCTCTCGCAGTGTTCTT 26229 | | || ||||| |||||||||| | ||||| | | || || ||| || ||| | Sbjct 40949 GCGTCCTTGGATTTTTGTTGCATTCTCCGCACCTGTTGCAGCCGCCACCGCTGTCTTCCT 41008 Query 26230 AGTTTATCCTTTCGGACAAGGGAGTTTTAGTGATGGAATGCCTCTTGGTATCTCTGGTAC 26289 || || | || ||||| ||||| ||||| ||||||||||||||| || || Sbjct 41009 CACCTACCCCATTGGGCAAGGAAGTTTCTCAGATGGCATGCCTCTTGGTATCAGCGGAAC 41068 Query 26290 TTTTAACTTTATGTTCGTATTCCAAGCAGAACATAATATACTCATGCACCCATTCCATAT 26349 || ||||| ||||| || ||||| || || || || || || |||||||| | ||||| Sbjct 41069 CTTCAACTTCATGTTGGTCTTCCAGGCCGAGCACAACATCCTTATGCACCCGCTTCATAT 41128 Query 26350 GGCTGGTGTTGCTGGGGTTTTCGGTGGAGCTCTTTTCGCTGCTATGCACGGAAGTTTGGT 26409 ||| || ||||| || || ||||| ||| || | ||| | || |||||||| | | || Sbjct 41129 GGCCGGAGTTGCAGGTGTCTTCGGAGGATCTTTGTTCTCCGCCATGCACGGGTCTCTTGT 41188 Query 26410 TACTTCCTCACTTATTGCAGAAACGACAGAGGAAGTCTCACAGAATTATGGCTATAAGTT 26469 ||||||||| | || ||||| || || | | || ||| | || || ||||| Sbjct 41189 TACTTCCTCTTTGATCCGTGAAACCACCGAAAACGAATCCACCAATAACGGATACAAGTT 41248 Query 26470 TGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTAAT 26529 ||| || || || || || || || |||||||| || |||||||||||||| | | || Sbjct 41249 TGGCCAGGAAGAGGAAACCTACAACATTGTCGCCGCTCACGGGTACTTTGGACGTCTCAT 41308 Query 26530 TTTTCAGTATGCGAGTTTTAATAACAGCCGTTCTCTTCATTTCTTTCTTGCTACTTGGCC 26589 || || || ||| || || ||| ||| ||||||| ||||| | ||| ||||| Sbjct 41309 CTTCCAATACGCGTCGTTCAACAACTCGCGTGCTCTTCACTTCTTCTTAGCTCTCTGGCC 41368 Query 26590 GGTTGTTGGCATATGGCTGACATCTATGGGTATCTGCACAATGGCATTTAACCTAAATGG 26649 || | || || ||| || | |||||| ||| ||| ||||| || ||||| || || Sbjct 41369 TGTATTGGGTATCTGGTGCACCGCCATGGGTGTCTCCACCATGGCCTTCAACCTCAACGG 41428 Query 26650 TTTTAACTTTAACCAGTCAGTAGTAGATGTTAATGGAAAGATAATACCTACATGGGCTGA 26709 || ||||| |||||| | || | || | ||| | || || ||||| || Sbjct 41429 ATTCAACTTCAACCAGGCTGTCATCGACTCCGAGGGACGTGTCATCAACACCTGGGCCGA 41488 Query 26710 TGTATTAAACCGAGCTAACCTCGGCTTTGAAGTTATGCACGAGCGTAATGCTCATAACTT 26769 || | ||||| || | || || | || || |||||||| ||||||||||||||||| Sbjct 41489 CATAATCAACCGTGCCGATCTTGGAATGGAGGTCATGCACGAACGTAATGCTCATAACTT 41548 Query 26770 TCCACTTGACTTAGCATC 26787 ||| ||||| || || || Sbjct 41549 TCCTCTTGATTTGGCTTC 41566 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146724485128776