Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_016657.1 Length=47055 Score E Sequences producing significant alignments: (Bits) Value seq217 527 2e-145 >seq217 Length=78499 Score = 527 bits (584), Expect = 2e-145 Identities = 713/991 (72%), Gaps = 10/991 (1%) Strand=Plus/Minus Query 35979 TCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCGGCACGG 36038 ||||| || ||||| || || ||||| || ||||| || ||||| || | ||||||||| Sbjct 41557 TCAAGAGGAAAGTTATGAGCATTACGTTCGTGCATGACCTCCATTCCAAGATCGGCACGG 41498 Query 36039 TTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGACTGACTGATTG 36098 || | ||||| ||||| || || ||| | ||| | ||| || | ||| | ||| ||| Sbjct 41497 TTGATTATGTCGGCCCAGGTGTTGATGACACGTCCCTCGGAGTCGATGACAGCCTGGTTG 41438 Query 36099 AAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGTAAGCCATATG 36158 ||||| || |||||||| || || ||||| |||||||| ||||| ||||| ||| || Sbjct 41437 AAGTTGAATCCGTTGAGGTTGAAGGCCATGGTGGAGACACCCATGGCGGTGCACCAGATA 41378 Query 36159 CAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTGCGGCTATTATTAAAGCTAGCA 36218 | || ||||| ||| | |||||| || | | || || || || || Sbjct 41377 CCCAATACAGGCCAGAGAGCTAAGAAGAAGTGAAGAGCACGCGAGTTGTTGAACGACGCG 41318 Query 36219 TACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTCTCTTCT 36278 || ||||||||||| | |||||||| || ||||| || |||||||| || || || ||| Sbjct 41317 TATTGGAAGATGAGACGTCCAAAGTACCCGTGAGCGGCGACAATGTTGTAGGTTTCCTCT 41258 Query 36279 TCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTCACGAATAAGT 36338 || ||||| || || ||||| | || ||||| | || |||||||| || | Sbjct 41257 TCCTGGCCAAACTTGTATCCGTTATTGGTGGATTCGTTTTCGGTGGTTTCACGGATCAAA 41198 Query 36339 GAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCA 36398 ||||||||||||||| |||||||| || | ||| |||| ||| ||||| || |||||| Sbjct 41197 GAGGAAGTAACAAGAGACCCGTGCATGGCGGAGAACAAAGATCCTCCGAAGACACCTGCA 41138 Query 36399 ACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACATA 36458 || ||| |||||| | ||| ||||||||||| ||||| || ||||| ||||| ||||| Sbjct 41137 ACTCCGGCCATATGAAGCGGGTGCATAAGGATGTTGTGCTCGGCCTGGAAGACCAACATG 41078 Query 36459 AAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAA 36518 || ||||| || || |||||||||||||| ||||| |||||||| ||||| |||| Sbjct 41077 AAGTTGAAGGTTCCGCTGATACCAAGAGGCATGCCATCTGAGAAACTTCCTTGCCCAATG 41018 Query 36519 GGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACACATATC 36578 |||||| | ||| ||||| || ||||||||||| || || | || ||| | ||| Sbjct 41017 GGGTAGGTGAGGAAGACAGCGGTGGCGGCTGCAACAGGTGCGGAGAATGCAACAAAAATC 40958 Query 36579 CACGGCCTCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAAGTAAGCTGAGATA 36638 || || | ||| || || | ||| ||||||||| | || |||| ||| | | | Sbjct 40957 CAAGGACGCATTCCGAGGCGATACGAAAGTTCCCACTCACGGCCCATGTACGAAGCAACT 40898 Query 36639 CCAATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAACCACTCGTCG 36698 || | || ||||| | ||||| | ||| || ||||||||||| || ||||| ||||| Sbjct 40897 CCGAGAAGGAAGTGCATCACAACCAATTGGTAGGGTCCTCCGTTGTACAACCATTCGTCC 40838 Query 36699 AGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTCGATGATGGGACG 36758 | || ||||||||||| | ||||||||||| | ||||||||||| | || |||| | Sbjct 40837 ATGGAGGCAGCTTCCCAAACGGGGTAGAAGTGCATCCCGATTGCGTTGKAAGAAGGGATG 40778 Query 36759 ATTGCCCCAGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCACGAATA 36818 | | ||| | ||||||||| || || || || | | ||| | ||||| || || || Sbjct 40777 ACAGACCCGGTGATGATGTTATTACCGTAAAGAAGAGATCCGGCAACAGGTTCGCGGATT 40718 Query 36819 CCATCTATATCCACGGGAGGCGCAGCAACAAATGC---AATTAAAAATGCTGTCACTGCT 36875 || || || ||||| ||||| || |||| |||||| ||| || ||| || |||| Sbjct 40717 CCGTCAATGTCCACAGGAGGTGCGGCAATAAATGCAGTAATGAAGCATGATG---CTGCG 40661 Query 36876 GTTAAAAGTGCAGGGATCAT--TAGTACCCCAAACCACCCCACATAGAGGCGGTTGTTTG 36933 | | ||| | |||| ||| ||||| || ||||| || | || |||||||||| | Sbjct 40660 GCAAGAAGAGTTGGGAACATGATAGTA--CCGAACCAACCGATGTAAAGGCGGTTGTCGG 40603 Query 36934 TACTTGTAACCCAGTCACATAAACTTTCCCA 36964 | ||||| | ||||| | || ||||||| Sbjct 40602 TGCTTGTGATCCAGTTGGAGAATTTTTCCCA 40572 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 150452436476046